Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06968 ATGGTTGGTTTGGTTATCCCCAAAACCCTAATCGATGTTTGTTCACCCTATATATTCCTTCGTGAGAGGCAAAACTCAAAGCCTCTCGCAGAGTTTCTGAAACAAACCCTAGAAACCCCTGAGAGAGAAAAAGCATACAGCAAAATGGCTGAAGGGCTTGTTCTTCGCGGTACCATGCGTGCTCACACCGACGTGGTTACGGCCATTGCCACGCCGATTGATAACTCTGACATGATAGTTACGGCGTCCCGTGACAAATCCATCATCCTCTGGCACCTCACTAAGGAGGATAAGACCTACGGTGTCCCCCGCCGCCGCCTCACCGGTCACTCTCACTTTGTCCAGGATGTCGTCCTTTCCTCCGATGGTCAGTTCGCTCTCTCCGGCTCCTGGGACGGTGAGCTCCGCCTCTGGGACCTCGCCGCCGGCACCTCCGCACGCCGCTTTGTAGGACACACAAAAGACGTGCTCTCTGTGGCTTTCTCGATCGACAACCGTCAGATCGTGTCGGCCTCTCGTGACCGCACGATTAAGCTGTGGAACACACTCGGTGAGTGCAAGTACACCATTCAGGACGGCGAAGCCCACACTGATTGGGTTAGCTGTGTCAGATTCAGCCCAAGCACTCTTCAACCCACCATCGTTTCCGCTTCTTGGGACCGCAGCATTAAAGTCTGGAACTTGACCAACTGCAAGCTGAGGAACACCCTTTCTGGACACTCTGGCTATGTTAACACAGTTGCAGTTTCCCCTGATGGTTCTCTCTGTGCCAGTGGTGGCAAAGACGGTGTCATTCTCCTTTGGGATTTGGCTGAGGGTAAGAGACTCTATTCTCTTGATGCCGGCTCAATTATCCATGCTCTCTGCTTCAGTCCCAACAGGTACTGGCTATGTGCTGCCACCGAGACTAGCATTAAGATCTGGGATTTGGAGAGCAAGAGCATTGTTGAGGATTTGAAGGTGGATCTCAAGACTGAGGCTGATGCAACCACAGGTGGTAACACCAACAAGAAGAAGGTTATCTACTGCACAAGCTTGAACTGGAGTGCAGATGGAAGCACTTTGTTTAGTGGCTACACTGACGGCGTGATCAGAGTTTGGGCAATTGGGCGTTATTAG 1119 0.5192 MVGLVIPKTLIDVCSPYIFLRERQNSKPLAEFLKQTLETPEREKAYSKMAEGLVLRGTMRAHTDVVTAIATPIDNSDMIVTASRDKSIILWHLTKEDKTYGVPRRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAAGTSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQDGEAHTDWVSCVRFSPSTLQPTIVSASWDRSIKVWNLTNCKLRNTLSGHSGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGSIIHALCFSPNRYWLCAATETSIKIWDLESKSIVEDLKVDLKTEADATTGGNTNKKKVIYCTSLNWSADGSTLFSGYTDGVIRVWAIGRY. 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06968 372 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 336 372 - -
Seca12g06968 372 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 149 181 - -
Seca12g06968 372 SUPERFAMILY WD40 repeat-like 53 367 IPR036322 GO:0005515
Seca12g06968 372 PANTHER RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 45 369 IPR045223 GO:0043022|GO:0045182
Seca12g06968 372 FunFam Receptor for activated C kinase 1 56 372 - -
Seca12g06968 372 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 101 IPR001680 GO:0005515
Seca12g06968 372 ProSitePatterns Trp-Asp (WD) repeats signature. 256 270 IPR019775 -
Seca12g06968 372 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 107 140 - -
Seca12g06968 372 SMART WD40_4 183 227 IPR001680 GO:0005515
Seca12g06968 372 SMART WD40_4 324 368 IPR001680 GO:0005515
Seca12g06968 372 SMART WD40_4 100 139 IPR001680 GO:0005515
Seca12g06968 372 SMART WD40_4 272 309 IPR001680 GO:0005515
Seca12g06968 372 SMART WD40_4 52 92 IPR001680 GO:0005515
Seca12g06968 372 SMART WD40_4 230 269 IPR001680 GO:0005515
Seca12g06968 372 SMART WD40_4 142 181 IPR001680 GO:0005515
Seca12g06968 372 ProSiteProfiles Trp-Asp (WD) repeats profile. 107 148 IPR001680 GO:0005515
Seca12g06968 372 PRINTS G protein beta WD-40 repeat signature 126 140 IPR020472 -
Seca12g06968 372 PRINTS G protein beta WD-40 repeat signature 256 270 IPR020472 -
Seca12g06968 372 PRINTS G protein beta WD-40 repeat signature 168 182 IPR020472 -
Seca12g06968 372 ProSitePatterns Trp-Asp (WD) repeats signature. 214 228 IPR019775 -
Seca12g06968 372 ProSiteProfiles Trp-Asp (WD) repeats profile. 344 372 IPR001680 GO:0005515
Seca12g06968 372 ProSiteProfiles Trp-Asp (WD) repeats profile. 193 236 IPR001680 GO:0005515
Seca12g06968 372 CDD WD40 55 368 - -
Seca12g06968 372 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 193 230 - -
Seca12g06968 372 Gene3D - 52 372 IPR015943 GO:0005515
Seca12g06968 372 Pfam WD domain, G-beta repeat 103 139 IPR001680 GO:0005515
Seca12g06968 372 Pfam WD domain, G-beta repeat 194 227 IPR001680 GO:0005515
Seca12g06968 372 Pfam WD domain, G-beta repeat 234 269 IPR001680 GO:0005515
Seca12g06968 372 Pfam WD domain, G-beta repeat 283 309 IPR001680 GO:0005515
Seca12g06968 372 Pfam WD domain, G-beta repeat 57 91 IPR001680 GO:0005515
Seca12g06968 372 Pfam WD domain, G-beta repeat 147 181 IPR001680 GO:0005515
Seca12g06968 372 Pfam WD domain, G-beta repeat 341 367 IPR001680 GO:0005515
Seca12g06968 372 ProSiteProfiles Trp-Asp (WD) repeats profile. 237 278 IPR001680 GO:0005515
Seca12g06968 372 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 93 - -
Seca12g06968 372 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 237 274 - -
Seca12g06968 372 ProSiteProfiles Trp-Asp (WD) repeats profile. 149 181 IPR001680 GO:0005515
Seca12g06968 372 ProSitePatterns Trp-Asp (WD) repeats signature. 126 140 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06968 Seca-Chr12 161671990 161674851 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06968 188 369 Miscellaneous Gene Families AT5G08390 26.087 7.54e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06968 K14753 - gmx:100778205 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06968 12 161671990 161674851 Seca12g06968 12 161671990 161674851 ECH