Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06958 ATGGCAAAGCCGGTGCCATGCTCCGGCATATTTCACCGCTACATCAGATTCAGAACCGCCACTTCTGCTTCAACTCCTCTCCTCACCGCCATGTCACTCAGATGCGCTCCTCTCAGACCTTCTATTCGCTCCATTTCTACCAGGATTACCCTTCCCCTTCCTCTTCGCCTTTCCTCCTGCTCCGCCTCGCTTAACCTTGATTCGAACCACAAACACAGTGCGGGCCTTAGGCACAGGATTGTTGCTCTGCCGTTTTGGCACCAACAGAGCTCCACTTATGGTCGTTTTGCCTACCAGGACGTGTCTAGTGACGATTCCGATGTTGAATTCGGCTCTTCTCACTCTCACCCTCACCCTCACCAACAATTGGGTGATTCAGCTGTTGAAAACATTGATGATTGGAGATGGAAGCTGACTATGCTTCTTCGCAATAAAGATGAGCAAGAAGTTGTGTCCAGGGAGAAAAAGGACCGGCGTGATTTTGAGCAACTTTCAGCTTTAGCTACCAGGATGGGATTATACAGCCGACAATATGCAAAGGTCGTCGTATTTAGCAAGGCACCTTTGCCAAATTACCGCCCTGATCTGGATGATAAGCGTCCACAAAGAGAGGTAGTCTTACCGTTTGGTGTTCATAGAGAAGTAGACACTCATCTCCTCTCCCATCTTTCACATAAGGCTACAAAAAGAAAAGGTTCTTTGGGTGATTCCCTGCATAGATCAAGTGATGCAAGAAACATTCCTGCCGATGAGGGAATTTATGAACAGCCAGAGCCTATGACCCATATTAGTGTTGTCAAGGAGAAAATACTTCGACGAAGAAGTTTGCAACTGCGTGATAAGCAACAAGATTGGCAGGAGTGTTCTGAAGGGCAAAAGATGCTTGAGTTTCGTAGAAGTCTTCCTGCATTCAAGGAGAAGGATGCATTTTTGAAAATCATTTCAGAGAATCAGGTCGTTGTTGTCTCAGGTGAAACTGGTTGTGGTAAGACCACACAACTTCCTCAATACATACTAGAATCTGAGATTGAAGCTGCACGTGGAGCTGTATGTAACATAATATGTACTCAGCCTAGAAGAATATCTGCTATGTCTGTTTCTGAAAGAGTTGCAGCAGAACGTGGGGAGAATCTGGGAGAATCTGTTGGTTACAAAGTCCGTCTGGAGGGTATGAAAGGGAGGGATACTCGACTTCTTTTTTGCACCACAGGTGTATTATTGCGGAGACTACTTGTGGATAGGGGTTTAAAAGGTGTAACTCATGTTATTGTTGATGAAATTCATGAACGGGGAATGAATGAAGATTTTCTTCTCATTGTCCTGAAGGATCTTCTCCCTCGTCGTCCTGATTTGAGGTTAATTTTGATGAGCGCAACATTAAACGCTGAGCTTTTTTCTTCCTACTTTGATGGTGCGCCAACTATGCATATCCCTGGTTTTACATTTCCAGTTCGAGCGCATTTTCTTGAGGATATTCTGGAAAAGACTGGATATCGATTGAATCCTTATAATCAAATTGATGACTATGGTCAAGAGAAAACATGGAAAATGCAGAAACAAGCTCAAGCTTTCAGAAAAAGAAAGAGCCAGATTGCTTCTGCTGTTGAGGATGCATTAGAGGTTGCAGACTTCAAGGGGTATAGCCTACGGACTCGGGAGTCATTGTCCTGCTGGTGCCCTGACTCAATTGGTTTTAACCTTATTGAACATGTGCTTTGCCACATTGTTAAAAATGAAAGACCAGGTGCTGTTTTGGTTTTCATGACTGGTTGGGATGATATAAACTCTTTGAAGGATCAGCTCCAAGCTCATCCTTTATTGGGTGATCAGAGTCAAGTATTGCTCCTTGCATGCCATGGCTCTATGGCCAGCTCTGAGCAGAAGTTGATATTTGAAAATCCTGAAGGAGGGGTGAGGAAAATTGTTCTGGCTACTAATATGGCTGAGACTAGTATCACCATCAATGATGTTGTCTTTGTGGTTGATTGTGGAAAAGCAAAAGAGACATCATATGATGCATTAAATAACACTCCTTGTTTGCTTCCGTCTTGGATCTCAAAAGCTGCTGCCCGGCAGAGAAGAGGAAGGGCTGGTCGTGTTCAACCTGGTGAATGCTACCATCTTTATCCCAGATGTGTTTATGACGCTTTTGCTGATTATCAATTGCCAGAGCTTTTAAGAACACCTTTGCAGTCCTTATGTCTGCAAATAAAAAGTCTACAACTTGGAAGCATCTCTGAGTTTTTATCTAGAGCTCTGCAGCCACCAGAGCCTCTATCGGTTCAAAATGCTGTTGAATATTTGAAAATTATTGGGGCCTTAGATGAGAATGAAAATTTGACAGTTCTAGGGCACAAGTTGTCAATGCTTCCTGTAGAGCCCAAACTTGGCAAGATGCTCATTTTGGGTGCTATTTTCAACTGTTTGGATCCCATATTGACTGTTGTTGCTGGGCTTAGTGTGAGAGATCCATTTGTTATGCCCGCTGACAAGAAGGACCTTGCTGAGTCTGCGAAGTCCCAGTTTGCTGCTCGTGACTATAGTGATCATCTTGCACTTGTCCGGGCTTATGATGGTTGGAGAGATGCTGAAGCACAGCAAGCTGGTTATGAGTATTGTTGGCGAAATTTTCTTTCTTCTCAAACCCTTAGGGCCATTGATTCTCTTCGGAAGCAATTCTTTTACTTGCTCAAAGATATTGGTCTGGTTGATAACAATTCTGAAACCTACAATACATGGAGTCATGAGCAGCAACTAGTCCGAGCTGTCATCTGTGCGGGTTTGTTTCCTGGAATATCCTCTGTTGTGAACAAAGAAAAGTCAATAGCACTGAAAACAATGGAGGATGGTCAGGTTCTTCTGTATGCTAACTCTGTAAATGCTTGTGTACCCAAAATTCCATACCCATGGTTAGTTTTTAATGAAAAGGTGAAGGTCAATACAGTATTCCTTAGGGACTCGACAGGTATATCTGATTCCATGCTGCTCTTATTTGGTGGGAACATATCCAGAGGTGGACTTGATGGTCACCTAAAAATGTTGGGAGGGTATCTGGAGTTTTTCATGAAACCAGAATTAGCCAAGACATACTTAAGTTTAAAAGGGGAACTGGATGAACTGATGCAGAAAAAACTTCTGGATCCCACATTCGATACACAATCGCATAATGAGCTTCTTTCAGCTGTAAGATTGTTGGTGTCAGAGGACCATTGTGATGGCAGATTTGTCTTTGGCCGCCAGGTCCTACCACAGTTGAAGAAGGCAACAAACTCCAAAAAGGGTGTTGGAGCTGAGGGTGATAATTCTAAAAACCAGCTTCAAACATTCCTTAACAGGGCTGGACATGAATCACCATCTTATAAAACAACGCAACTGAAAAACAACCAATTCCGTTCCACTGTCATATTCAATGGCTTGAATTTTGTTGGACAGCCATGCAGCAGCAAAAAGGTAGCAGAAAAATCTGCGGCTGCTGAGGCTATTATGTGGTTAAAAGGGGGTACGCATTCATCTGGTGATATTGACCATGCGTCTGTGCTTTTGAAAAAGAGCAACAAGAAAAGTAGGAAAAAATCGTTTAGTGGTGCTAAATGGAGTTGA 3600 0.4325 MAKPVPCSGIFHRYIRFRTATSASTPLLTAMSLRCAPLRPSIRSISTRITLPLPLRLSSCSASLNLDSNHKHSAGLRHRIVALPFWHQQSSTYGRFAYQDVSSDDSDVEFGSSHSHPHPHQQLGDSAVENIDDWRWKLTMLLRNKDEQEVVSREKKDRRDFEQLSALATRMGLYSRQYAKVVVFSKAPLPNYRPDLDDKRPQREVVLPFGVHREVDTHLLSHLSHKATKRKGSLGDSLHRSSDARNIPADEGIYEQPEPMTHISVVKEKILRRRSLQLRDKQQDWQECSEGQKMLEFRRSLPAFKEKDAFLKIISENQVVVVSGETGCGKTTQLPQYILESEIEAARGAVCNIICTQPRRISAMSVSERVAAERGENLGESVGYKVRLEGMKGRDTRLLFCTTGVLLRRLLVDRGLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPDLRLILMSATLNAELFSSYFDGAPTMHIPGFTFPVRAHFLEDILEKTGYRLNPYNQIDDYGQEKTWKMQKQAQAFRKRKSQIASAVEDALEVADFKGYSLRTRESLSCWCPDSIGFNLIEHVLCHIVKNERPGAVLVFMTGWDDINSLKDQLQAHPLLGDQSQVLLLACHGSMASSEQKLIFENPEGGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVQNAVEYLKIIGALDENENLTVLGHKLSMLPVEPKLGKMLILGAIFNCLDPILTVVAGLSVRDPFVMPADKKDLAESAKSQFAARDYSDHLALVRAYDGWRDAEAQQAGYEYCWRNFLSSQTLRAIDSLRKQFFYLLKDIGLVDNNSETYNTWSHEQQLVRAVICAGLFPGISSVVNKEKSIALKTMEDGQVLLYANSVNACVPKIPYPWLVFNEKVKVNTVFLRDSTGISDSMLLLFGGNISRGGLDGHLKMLGGYLEFFMKPELAKTYLSLKGELDELMQKKLLDPTFDTQSHNELLSAVRLLVSEDHCDGRFVFGRQVLPQLKKATNSKKGVGAEGDNSKNQLQTFLNRAGHESPSYKTTQLKNNQFRSTVIFNGLNFVGQPCSSKKVAEKSAAAEAIMWLKGGTHSSGDIDHASVLLKKSNKKSRKKSFSGAKWS. 1200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06958 1199 FunFam Putative ATP-dependent RNA helicase DHX36 743 848 - -
Seca12g06958 1199 Gene3D - 564 719 IPR027417 -
Seca12g06958 1199 Gene3D - 743 844 - -
Seca12g06958 1199 SMART helicmild6 595 701 IPR001650 -
Seca12g06958 1199 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 305 880 IPR027417 -
Seca12g06958 1199 Pfam Helicase associated domain (HA2) 764 849 IPR007502 GO:0004386
Seca12g06958 1199 Pfam Helicase conserved C-terminal domain 569 700 IPR001650 -
Seca12g06958 1199 SMART ultradead3 299 492 IPR014001 -
Seca12g06958 1199 Pfam DEAD/DEAH box helicase 310 462 IPR011545 GO:0003676|GO:0005524
Seca12g06958 1199 SMART DRBM_3 1102 1165 IPR014720 -
Seca12g06958 1199 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 311 478 IPR014001 -
Seca12g06958 1199 FunFam DExH-box ATP-dependent RNA helicase DExH3 563 719 - -
Seca12g06958 1199 PANTHER ATP-DEPENDENT RNA HELICASE 246 1039 - -
Seca12g06958 1199 FunFam DExH-box ATP-dependent RNA helicase DExH3 254 479 - -
Seca12g06958 1199 Gene3D - 1083 1168 - -
Seca12g06958 1199 Pfam Double-stranded RNA binding motif 1102 1161 IPR014720 -
Seca12g06958 1199 MobiDBLite consensus disorder prediction 1183 1199 - -
Seca12g06958 1199 Gene3D - 258 479 IPR027417 -
Seca12g06958 1199 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1101 1166 IPR014720 -
Seca12g06958 1199 SMART ha2_5 763 854 IPR007502 GO:0004386
Seca12g06958 1199 SUPERFAMILY dsRNA-binding domain-like 1085 1167 - -
Seca12g06958 1199 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 920 1002 IPR011709 -
Seca12g06958 1199 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 567 741 IPR001650 -
Seca12g06958 1199 CDD SF2_C_RHA 558 709 - -
Seca12g06958 1199 MobiDBLite consensus disorder prediction 1179 1199 - -
Seca12g06958 1199 CDD DEXHc_RHA-like 317 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06958 Seca-Chr12 161538664 161550053 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06958 K14442 - gmx:100791006 2007.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06958 12 161538664 161550053 Seca12g06958 12 161538664 161550053 ECH