Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06952 ATGGGAAGCCCCGGATTGAGCAACCTCAATAATGTACAACAGCAACGGTTAGGAATAACGGAACCCATCTCATGGGGTGGACCAACGGAATATGATGTGATCAAGACCAGTGAACTTGAGAAGTACTTGCAAGATGCTGGTTTGTATGAGAATCAGCAGGAGGCAGTTAGTAGGGAGGAAGTGCTTGGAAGACTAGACCAGATTGTGAAGATTTGGGTCAAAACCATTAGCCGTGCTAAGGGACTTAATGAACAGCTGGTGCAAGAAGCAAATGCCAAGATTTTTACTTTTGGCTCCTATCGGCTAGGGGTGCATGGCCCTGGAGCAGATATAGACACTCTTTGTGTGGGACCTAGACATGCATCCAGAGATGAAGATTTCTTTGGTGAGCTACATAAGATGCTATCTGAGATGCCAGAAGTAACAGAGTTGCACCCTGTGCCTGATGCTCGTGTTCCTGTGATGAGATTCAAGTTAAATGGTGTTTCTATAGATCTCCTCTATGCAAAATTATCTTTGTGGGTTATTCCTGAAGACTTGGATACATCACAAGAGTCAATATTACAAAATGCAGATGAAGAAACTGTCCGTAGTCTTAATGGTTGTAGAGTGACCGATCAAATCTTACGTCTGGTTCCACATATTCAGAATTTTCGCACAACATTGAGATGCATGAAGTTATGGGCAAAATGTCGTGGTGTTTATTCAAATGTTTCAGGTTTTCTTGGTGGTATAAACTGGGCATTGCTTGTCGCTCGAATATGTCAGCTATTTCCTAATTCACTGCCTAATATGTTAGTGTCTCGATTCTTTAGGGTATATGGTCAGTGGCGTTGGCCAAATCCTGTAATGCTTTGTCCTATAGAAGAAGGATCTCTTGGACTTCAAGTTTGGGATCCTAGAAGATATCCCAGAGATAGATACCATTTGATGCCAATAATTACTCCTGCTTATCCATGCATGAATTCTAGTTATAATGTGTCATCAAGTACATTGTGTATTATGTCGGGGGAGTTTCAGAGAGGGAATGAAATATGTGAGGCTATGGAGGCTAACAAGGCTGATTGGGATACTCTTTTTGAGCCTTATCCCTTTTTCGATGCTTATAAGAATTATTTGCAGATAGACATTTCAGCCGAGAATGCTGATGATCTTAGAAAATGGAAAGGCTGGGTGGAGTCTCGCCTGCGCCAGTTGACCTTGAAGATTGAGAGGCACACTTTTGGCATGCTTCAGTGTCATCCACATCCTGGTGACTTTTCAGACAAATCTAGACCTTTGCACGGATCTTACTTCATGGGTCTGCAACGTAAGCAAGGAGTTCCTGTCAATGAAGGTGAACAATTTGATATAAGATTAACTATTGAAGAATTTAGGCATTCAGTCAACATGTACACTCAATGGAAACCTGGAATGGATATCCATGTCTCCCATGTGAAACGCCGTAATATACCTAACTTTGTATTTCCTGGTGGTGTTCGACCTTCCCGTCCTTCTAAAGTGACCTGGGAGAGTAGGCAAAGTTCAGAATTAAGGATTTCTGGCCATGGTGAAGCAGAAAAATCTGAAGAAGGTAAAGTGGTTGTATTAGGAGGAAATGATGATAGAAAGAGAAAGCAAGCAGATGATAGTGTGGATGACTTGAGAAATTTCAAGTCCTTTGCATCTTTGCCTCCCTCCAGCAGTGAAGTTAAGGGAGATAGAAATACTATCAGCACTGCTAGTTCTTGCTGTGTGAAATGTGATGATGCAGAAGTCAACAGTATGAGTGAACAAAAGAGTGAGAAACCTGATTTGAAATCTTCAGAGGAGTGTCCTTCTAGCTCTAGGGATAGACAGACCAATGGATCAGTGAGAAGCAACTCACAAGTTAACCCTATACTTACTGCTACTGCTACACCTACTTCTAAAGAAGCAGAAAAGCTAGCCATTGAGAAGATTGTGTGTAGTCCATATAATGCACATCAAACCTTTTCAGAAGAACCTGATGAGCTTGAAGATGATCTTGAGTATAGAAATCAAGTTAAATATTTTGGTGGGAACATGAAAAACAGCAACATGGACTCTTCAAACTCAGAATCTGCAGTGGCAGCAGAACACCTTATTTCTAAAAAGGAAGCCACTTGTTCAACTCATTTACACTCAAATGGGGGCTTAGAGGAGCTTGAGCCTATTGAGCTGACAGCGCCATTGTTAAGTGGGAATCCTGCACCTGTGCCACAGCGGAAGCCCATTATCAGGTTGAAGTTCACCTCCTTGGGGAGACCTGCTGACAAAAGTTCTTAG 2286 0.4204 MGSPGLSNLNNVQQQRLGITEPISWGGPTEYDVIKTSELEKYLQDAGLYENQQEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHASRDEDFFGELHKMLSEMPEVTELHPVPDARVPVMRFKLNGVSIDLLYAKLSLWVIPEDLDTSQESILQNADEETVRSLNGCRVTDQILRLVPHIQNFRTTLRCMKLWAKCRGVYSNVSGFLGGINWALLVARICQLFPNSLPNMLVSRFFRVYGQWRWPNPVMLCPIEEGSLGLQVWDPRRYPRDRYHLMPIITPAYPCMNSSYNVSSSTLCIMSGEFQRGNEICEAMEANKADWDTLFEPYPFFDAYKNYLQIDISAENADDLRKWKGWVESRLRQLTLKIERHTFGMLQCHPHPGDFSDKSRPLHGSYFMGLQRKQGVPVNEGEQFDIRLTIEEFRHSVNMYTQWKPGMDIHVSHVKRRNIPNFVFPGGVRPSRPSKVTWESRQSSELRISGHGEAEKSEEGKVVVLGGNDDRKRKQADDSVDDLRNFKSFASLPPSSSEVKGDRNTISTASSCCVKCDDAEVNSMSEQKSEKPDLKSSEECPSSSRDRQTNGSVRSNSQVNPILTATATPTSKEAEKLAIEKIVCSPYNAHQTFSEEPDELEDDLEYRNQVKYFGGNMKNSNMDSSNSESAVAAEHLISKKEATCSTHLHSNGGLEELEPIELTAPLLSGNPAPVPQRKPIIRLKFTSLGRPADKSS. 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06952 761 MobiDBLite consensus disorder prediction 511 544 - -
Seca12g06952 761 MobiDBLite consensus disorder prediction 588 607 - -
Seca12g06952 761 MobiDBLite consensus disorder prediction 554 569 - -
Seca12g06952 761 Gene3D - 18 360 - -
Seca12g06952 761 FunFam Putative poly(A) polymerase gamma 178 360 - -
Seca12g06952 761 Pfam Nucleotidyltransferase domain 83 152 IPR002934 GO:0016779
Seca12g06952 761 Pfam Poly(A) polymerase predicted RNA binding domain 365 423 IPR007010 GO:0003723|GO:0043631
Seca12g06952 761 Pfam Poly(A) polymerase predicted RNA binding domain 430 496 IPR007010 GO:0003723|GO:0043631
Seca12g06952 761 Gene3D Beta Polymerase, domain 2 50 206 IPR043519 -
Seca12g06952 761 MobiDBLite consensus disorder prediction 495 544 - -
Seca12g06952 761 MobiDBLite consensus disorder prediction 550 569 - -
Seca12g06952 761 SUPERFAMILY Nucleotidyltransferase 18 211 IPR043519 -
Seca12g06952 761 Gene3D Poly(A) polymerase predicted RNA binding domain 364 479 - -
Seca12g06952 761 CDD NT_PAP_TUTase 58 212 - -
Seca12g06952 761 MobiDBLite consensus disorder prediction 608 633 - -
Seca12g06952 761 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 363 489 IPR011068 GO:0003723|GO:0016779|GO:0031123
Seca12g06952 761 MobiDBLite consensus disorder prediction 588 633 - -
Seca12g06952 761 FunFam Nuclear poly(A) polymerase 4 364 479 - -
Seca12g06952 761 Pfam Poly(A) polymerase central domain 18 362 IPR007012 GO:0043631|GO:1990817
Seca12g06952 761 SUPERFAMILY PAP/OAS1 substrate-binding domain 213 362 - -
Seca12g06952 761 PANTHER POLY A POLYMERASE 11 583 - -
Seca12g06952 761 FunFam Poly(A) polymerase alpha, putative 50 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06952 Seca-Chr12 161494972 161500684 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06952 K14376 - gmx:100816915 1160.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06952 12 161494972 161500684 Seca12g06952 12 161494972 161500684 ECH