Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06859 ATGGCGGGGTCTTCAATCATGGAGAACCTCTTCCAACGCACGCTCGAGGATCTCATCAAAGCCATGCGTCTCCAGCTGATCGGTGAATCTACCTTCATCTCAAAGGCCACGGAGGAGATCCGTCGCGAGATCAAATCAACGGATCCACACACCAAATCCACTGCTCTCGAAAAACTCTCCTATCTCTCCGTCATCTACGGCGTCGACATGTCCTGGGCTTCCTTCCACGTCGTCGAGGTCATGTCCTCTTCCCGCTTCGCTCACAAGAGGATCGGTTACCATGCCGCCACCCTCTCTTTCCACGACGCCACCCCTGTCCTCCTCCTCATCACCAACCAGCTCCGCAAGGACCTCTCCTCCAACAACCACTTCGAGGTATGCCTCGCCCTTCATTGCTTGTCCACAATCGCCACCCTCGACCTCGCTAGGGATTTGACTCCCGAGGTTTTCAAGTTACTCTCTGTTTCTAGGGTTTTCGTTAGGAAAAAAGCCATTGCTGTCGTTTTGAGGGTTTTCGACAAGTATCCTGACGCCGTTAGGGTTTGCTTTAAGCGCTTGGTTGAGAATCTAGAAAGTTCCGATCCTCAGGTTGTGACTGCTGTGATTGGGGTCTTTTGTGAGCTAGCCTCCAAGGATCCGAGGTCGTATCTCCCACTGGCGCCTGAGTTTTATAGAATTTTGGCTGATTCTAAGAACAATTGGGTTCTAATCAAGGTTTTGAAGATATTTGCCAAGTTGGCTCCTTTGGAACCCAGGTTGGGGAAAAGGATTGTTGAACCTATTTGTGAGCATATGAGGAGATCTGGAGCGAAGTCGTTAGTCTTTGAGTGTGTTAGGACTGTTCTCACTAGCTTGAGTGATCATGAGTCTGCTGTTAAGCTTGCTGTCTCAAATGTTAGGGAGTTTTTAGTTGATCAGGATCCCAATCTTAGGTATCTTGGGCTGCACGCACTTTCGGTTGCTGCTGAGAAGCACTTGTGGGCAGTGTTGGAGAATAAGGAGGCTGTGATTAAATCTTTGAATGATGAAGATTCGAATATCAAAATTGAGTCTTTGCGTTTGTTGATGGCCATGGTGTCTGAGAGCAACGTTGCAGAAATCTCCAGGGTGTTGCTCAATTATGCATTGAAATCTGACCCTGAATTTTGCAATGAGATTTTGGGTTCCATTTTAACCACCTGTGGTAGAAATTTTTATGAGATCGTTGTTGACTTTGATTGGTATGTATCTCTTCTTGGAGAAATGGCGACAATTCCTAATTGTCAAAAGGGTGAAGAAATTGAGAATCAACTTATTGATATTGGCATGAGAGTCAAGGATGCTAGATTGCAGCTTGTTCAGGTTGGCCGTGATCTGTTGATTGATCCTGCGTTGCTGGGTAATGCGTACTTGCATAGGATACTGTGTGCGGCTGCTTGGGTTGCTGGAGAGTATGTTGAGGTTGCAAGCAATCCATTTGAACTCATGGATGCACTCCTACAACCTCGTACCAATCTATTGCCACCATCAATAAGAGCAGTTTATATAAATTCTGCCCTTAAAGTTTTAAGTTTTTGCCTGGAGTGTTACCTTCTGGAGAATGAAGGTGCTGCATCCTCATACTGTGGTAATTTGGCTGGGGGAAAGTCAGAACAGTTTATTTTTAGAGAAAACACTGAGGCTCCTGAATTGGCAACATGTGAAGGTTCAAATTATGAACAGGATGAGGGCTTTAACCCAAGGAACACAGCCGATTCTTCTGAAGATCTATCTGTTGGAAATGACACAGATAGAGTTGTCATACATGGGCAGACATCTACATCTACTCTTTTGGCGCAGAAGAATTTCACCCATGAATCTATTGTAAGCCTATTAAATCGAATTGAATTAATTTTTGGTCCACTAACAGCAAATCAGGATGTCGAAATACTGGAGAGAGCGCGGAATGTACTTGGCTTTGTTCAGTTGATTAAAGCTGAAATAATTGACAATTCAGTTCAGAATGTGGACATTATGGACAAGAAATATACTCAAGTTTCAGCTATTATCAAATTGATGCGTGATGCTATTTCTATGGAACTTGGTCCAGTGTCAATAAGTGCACAGGGAAGAGTTGCTCTACCTGATGGATTAGTTCTTAAAGAGAATCTTGATGACTTAAAAGCTATATGTGGTGATATTGAACTACCTTCATCAAGTTCGTTTTGCATTGGATTTGGTGCTACTTCAGACACTTCTTCATCTAATCTTGTGAAAAATGAAGAGTTAGGGTCATCAAATGAATCTACATCATTGCTTGAACACCGAAAGCGGCATGGTTTATATTACCTTGCTTCAGAGAAGAGGGAGATTGTTCCAGATGATTATCCTCCTGCAAATGACCCAAACTCAAACAGTAATATAAATGATGAAGCTGCAGAGCTAGCCAAGCTGACTGAGCAATCACTTCTTTTGAAGAAAAGGTCAAACCAAATGAAGCCCAGGCCTGTAGTGGTGAAATTGGATGATGGAGATGTGGCACCAATTTTAGTCAAAAGGCCAGAGCCAAGGGATGATTCTCTTTCTGGTGCTGTGAAAGAGGTTCTTCTAGGAAGTGAAACCAGACCGAGTTTGTCTCAAAGTAAGCATTCTAATAAGTCATCAAGTAAGCGGAAAGACAAAAAGAAACTAGGCACAGATCTTCCATCTGAGATGAAAGAAAATCTGGGTGATGCAGAAAAGCCTGATCCTGAAAATCCGAATTCAAGTAGCAAAAAAGAGAGAAGACGGAAAGGTAAAGAGAAGATTGTTGAAGGGGAAGAACATGATCAGAGGGGAAAGAAAAAGAGTAGCCACCGCCATGGTAGGCGTAAAACTCATCAAAGAGCAAATTCACCCTTAAATGTGGTTTCCCAAACACCAGTAATTCCAGATTTTCTTTTGTAG 2904 0.4335 MAGSSIMENLFQRTLEDLIKAMRLQLIGESTFISKATEEIRREIKSTDPHTKSTALEKLSYLSVIYGVDMSWASFHVVEVMSSSRFAHKRIGYHAATLSFHDATPVLLLITNQLRKDLSSNNHFEVCLALHCLSTIATLDLARDLTPEVFKLLSVSRVFVRKKAIAVVLRVFDKYPDAVRVCFKRLVENLESSDPQVVTAVIGVFCELASKDPRSYLPLAPEFYRILADSKNNWVLIKVLKIFAKLAPLEPRLGKRIVEPICEHMRRSGAKSLVFECVRTVLTSLSDHESAVKLAVSNVREFLVDQDPNLRYLGLHALSVAAEKHLWAVLENKEAVIKSLNDEDSNIKIESLRLLMAMVSESNVAEISRVLLNYALKSDPEFCNEILGSILTTCGRNFYEIVVDFDWYVSLLGEMATIPNCQKGEEIENQLIDIGMRVKDARLQLVQVGRDLLIDPALLGNAYLHRILCAAAWVAGEYVEVASNPFELMDALLQPRTNLLPPSIRAVYINSALKVLSFCLECYLLENEGAASSYCGNLAGGKSEQFIFRENTEAPELATCEGSNYEQDEGFNPRNTADSSEDLSVGNDTDRVVIHGQTSTSTLLAQKNFTHESIVSLLNRIELIFGPLTANQDVEILERARNVLGFVQLIKAEIIDNSVQNVDIMDKKYTQVSAIIKLMRDAISMELGPVSISAQGRVALPDGLVLKENLDDLKAICGDIELPSSSSFCIGFGATSDTSSSNLVKNEELGSSNESTSLLEHRKRHGLYYLASEKREIVPDDYPPANDPNSNSNINDEAAELAKLTEQSLLLKKRSNQMKPRPVVVKLDDGDVAPILVKRPEPRDDSLSGAVKEVLLGSETRPSLSQSKHSNKSSSKRKDKKKLGTDLPSEMKENLGDAEKPDPENPNSSSKKERRRKGKEKIVEGEEHDQRGKKKSSHRHGRRKTHQRANSPLNVVSQTPVIPDFLL. 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06859 967 MobiDBLite consensus disorder prediction 879 933 - -
Seca12g06859 967 MobiDBLite consensus disorder prediction 563 585 - -
Seca12g06859 967 Pfam Adaptin N terminal region 31 501 IPR002553 GO:0006886|GO:0016192|GO:0030117
Seca12g06859 967 MobiDBLite consensus disorder prediction 565 583 - -
Seca12g06859 967 Gene3D - 4 539 IPR011989 -
Seca12g06859 967 SUPERFAMILY ARM repeat 30 647 IPR016024 -
Seca12g06859 967 MobiDBLite consensus disorder prediction 857 967 - -
Seca12g06859 967 PIRSF AP3_delta 1 563 IPR017105 GO:0015031|GO:0030123
Seca12g06859 967 PIRSF AP3_delta 591 961 IPR017105 GO:0015031|GO:0030123
Seca12g06859 967 PANTHER DELTA ADAPTIN-RELATED 1 966 IPR017105 GO:0015031|GO:0030123
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06859 Seca-Chr12 160558763 160561666 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06859 K12396 - gmx:100815221 1488.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06859 12 160558763 160561666 Seca12g06859 12 160558763 160561666 ECH