Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06855 ATGAGGTGTTCTACGGAGACTATCAATATCGCTGCGAGTACTCAGAAACTCGATGTCGATAATCGAATTGCGCTCCGATTCTACTACAGGATCGCCGATAATATCCTCAAACAGGCTGATATCTTTCGTGCCGAGAAAAATATTGTTGATCTATATATCATGCTCCTAAGATTTTCTAGTTTGGTGTCAGAGACAATACCACATCACCGAGATTATAGAACATCTCCACAAAGCAAGAAAGAATCATTAAGAAAGAAATTGTTATATTCTGTGAATGAACTGGAGAAGTTGAAACCACTGGTACAACTGAAGATCAATGAGTTCAACAGCAGGCAAGCATACCAACACAATGGACGGGAAAAATGTCATTCAAATAATTTGATGGATTTTTCTCCAGTGAAAAAGCAAACTTTGGCTAGTTATAATCAAATAAAGGCAGTCAGACCAACCACTGGTGAGTTTGTCTACCAAGGATCAAGGGGCCAGCAGTTTTCTTATGTAAGGCCTGTGGAAGAGAATATGAAAAGACTATCTCTAACTCTCCCACGGCCAAAGGAAGAAACTCTCTCTAGACATTCTATTCTAGGTCCGAATGGGCTTAGCGGGCAGTGGCGACCACCTTCAAGTGATAAAGGGGTCAGGTATCCATCCATTTTAGATCTGTCTCCAGTTGAAATTCCAAGAACAAACAGCCTTCAACAATCCTTGGAAGATGGATCCCTGAATAAAAAAGATAATAGCATTTCAGAACGCAATAGATTAGATTTAGAATCTATTATTACCCAGAGTGAGGACTGCCAGGCTCAGCGTGCTGATGAAGCTCCTTCTCTTATCTCTTTTGAAGCAACAGAAATCCCTGCTCAAATAGAAGTTATTAGACAGCCTTCTCCTCCACCTGTACTTGCTGAAGTACGAGATTTGGTTCCTGCAGTATCACTTCATGGTGATGAGGCAGGATGTAAGACAGAGACTCCATCATCAGATACTTCTGTTCGTGCTGAGTCTCCTCTGCAAGTGCACATATCAACTGATATGATGGAGAGTTTTATGAAGCTTGCCAAGTCGAATACTAAAAAAAATTTAGAGACTTGTGGTATCCTTGCAGGTTTGCTTGTAAGTGTTCACATTTTTTTGTCTTGA 1140 0.4061 MRCSTETINIAASTQKLDVDNRIALRFYYRIADNILKQADIFRAEKNIVDLYIMLLRFSSLVSETIPHHRDYRTSPQSKKESLRKKLLYSVNELEKLKPLVQLKINEFNSRQAYQHNGREKCHSNNLMDFSPVKKQTLASYNQIKAVRPTTGEFVYQGSRGQQFSYVRPVEENMKRLSLTLPRPKEETLSRHSILGPNGLSGQWRPPSSDKGVRYPSILDLSPVEIPRTNSLQQSLEDGSLNKKDNSISERNRLDLESIITQSEDCQAQRADEAPSLISFEATEIPAQIEVIRQPSPPPVLAEVRDLVPAVSLHGDEAGCKTETPSSDTSVRAESPLQVHISTDMMESFMKLAKSNTKKNLETCGILAGLLVSVHIFLS. 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06855 379 MobiDBLite consensus disorder prediction 183 211 - -
Seca12g06855 379 SUPERFAMILY USP8 N-terminal domain-like 22 121 - -
Seca12g06855 379 Gene3D Cytidine Deaminase, domain 2 319 378 - -
Seca12g06855 379 Gene3D - 1 127 - -
Seca12g06855 379 FunFam AMSH-like ubiquitin thioesterase 3 4 120 - -
Seca12g06855 379 Pfam USP8 dimerisation domain 10 98 IPR015063 -
Seca12g06855 379 PANTHER AMSH-LIKE PROTEASE 5 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06855 Seca-Chr12 160504902 160512221 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06855 K11866 - gmx:100800636 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06855 12 160504902 160512221 Seca12g06855 12 160504902 160512221 ECH