Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06849 ATGAGTAATAGTAAGAAAAGGGTCATTCCCATAAATTTGGAAGAGGCTGCAGTGGACTTGTTAAACCACGTGGTGAAGGTGAAAGAGAAGGCCAGAATTTCATTCTTTGTTTCTCTGATTTTGATTGCTTGGGCTATTCACAGATGGCTCTTCTCTTTCTCCAATTGGCTTCTCCTTGCACTTGCTCTATGGGCATCTACACAATATGGGAATTACCAGCGCAAATTACTTGAGGAGGACTTGAATAAGAAATGGAATCGGATCCTACTCAACACCTCGCTCGTCACACCATTGGAACACTGTGAGTGGTTGAATTTGCTGCTCACACAAATCTGGTCCAACTATTTTAACCCAATGCTCTCAAAAAGGTTATCATCCATAGTTGAGAAACGTTTAAAGCTCCGGAAACCAAGATTTATAGAAAGAGTTGAGGTGCAGGAGTTTTCACTTGGATCATGTCCTCCAAGTTTGGGTCTTCAAGGGATGCGATGGTCAACCTCTGGTGATCAGCGAGTCCTAAAAATGGGCTTTGATTGGGACACGAGTGAAATGAGCATCTTGATGGTTGCTAAGCTTGCTGTTGGAACTGCACGAATTATGATTAACAGCCTTCATATCAAGGGTGATCTTCTTGTAACACCAATTCTAGATGGGAAAGCACTTTTATATTCATTTTCATCTACACCTGAGGTGAGAATAGGAGTTGCCTTTGGAAGTGGAGGAAGCCAATCAGCCACTGAGTTACCTGGTGTTTCTCCTTGGCTGATTGTACATTTCCATTTCATACAGGTTAGGCTTTTCACTGACACGTTGGTTAAGACCATGGTGGAACCTAGGCGCCGTTGTTTAACTTTGCCTGCAGTTAATTTAAGGAAAACTGCTGTTGGAGGCATTATATATGTTACAGTGATTTCAGCAAACAAGCTTTCTAGGAGGCAACAAAATGGCACAATCAATGACCGTTTAGAAGACAACTTGGATGATAACAAGGACTTACAGACATTTGTAGAGGTAGAAGTGGAGGAACTGACCAGGAGGACAGGTGTGAGCCTTGGTTCAACTCCAACATGGGATGCAACATTTAATATGGTTTTACATGATAATACAGGAATTGTTCGTTTCAATCTTTATGACTCTCCCCCTGGCGATGTCAAATATAACTACCTAGCAAGTTGTGAAATCAAGATGAGGCATGTCGAAGATGATTCAACAATACTGTGGGCAATAGGGCCTGATTCTGGTGTCATAGCAAAGCATGCAAAGTTCTGTGGAGATGAAGTTGAAATGGTTGTCCCATTTGAGGGGGCCAACTCAGGAGAGTTAAAGGTAAGAATTGTGGTAAAAGAGTGGCAATTTTCTGATGGTTCACATAGCTTGAACAACCACCGTCCTAGTTCTCAGCAATCACTTAACGGATCATCAGATCTTTTGTCAAGAACTGGAAGGAAACTTAAGATAACTGTTGTGGAAGCAAAGGAATTGGCTACAAAAGACAGGTGTGGAAAAATTGACCCATACATCAAATTGCAATATGGAAAGGTTGTCAAGAGAACAAATATTGCTCCTCCTCCTACTAGTCCAAATCCTGTTTGGAATCATTCATTTGAGTTTGATGAGAATAGTGGTGATGAATACCTAAATGTAAAATGCTTTAGTGAAGAAATTTTTGGAGATGAGAACATTGGTAATGCACATGTAAATTTGGAAGGACTGGTAGACGGGTCAATCAAGGATGTATGGATACCTCTTGAAGGAGTGAGTTCTGGTGAATTAAGACTTAAAATAGAAGTGATTAGGATGCAGGACCAAGAAGGATCAAGGGGTTTAGCTAATGGTTGGATAGAACTTGTTCTGATTGAAGCAAGGGATCTTATTGCTGCCGATCTTCGAGGGACAAGTGATCCTTATGTGAGGGTAAACTATGGAAACTTGAAGAAAAGGACAAAGGTTGTGCACAAAACTCTCAACCCTCGTTGGAACCAGACCTTAGAGTTCCTTGAAGATGGCAGTCCCTTGACACTGCATGTTAAGGACCATAATGCTTTATTACCCACATCAAGTATAGGTGAATGTGTTGTGGAATATCAAATGTTGCCTCCAAACCAGATGTCTGATAAGTGGATACCTCTCCAAGGGGTGAAAAGTGGTGAGATTCACATCCAAATTACAAGAAAAGTTCCACAGATGCAAACGAGACACAGTCCAGAATCTGAACCTTCATTGAGTAAATTACACCAAATTCCTAGCCAGATAAAAGAGATGATGAAGAAGTTTCGATCTTTAATAGAGGATAGAAATGTTGAAGGACTGTCTACAATTTTGAGTGAGTTAGAAACTCTAGAGGATACACAGGAAGGGTATATAACTCAGTTGGAGACAGAGCAAACACTTCTTCTGAGCAAAATAAATGAATTGGGGCAGGCCATCATCAATTCTTCTCCTTCTCCTTCTCGCACCACTAGTCTTTCTCCAACTGGAAATTGA 2484 0.4098 MSNSKKRVIPINLEEAAVDLLNHVVKVKEKARISFFVSLILIAWAIHRWLFSFSNWLLLALALWASTQYGNYQRKLLEEDLNKKWNRILLNTSLVTPLEHCEWLNLLLTQIWSNYFNPMLSKRLSSIVEKRLKLRKPRFIERVEVQEFSLGSCPPSLGLQGMRWSTSGDQRVLKMGFDWDTSEMSILMVAKLAVGTARIMINSLHIKGDLLVTPILDGKALLYSFSSTPEVRIGVAFGSGGSQSATELPGVSPWLIVHFHFIQVRLFTDTLVKTMVEPRRRCLTLPAVNLRKTAVGGIIYVTVISANKLSRRQQNGTINDRLEDNLDDNKDLQTFVEVEVEELTRRTGVSLGSTPTWDATFNMVLHDNTGIVRFNLYDSPPGDVKYNYLASCEIKMRHVEDDSTILWAIGPDSGVIAKHAKFCGDEVEMVVPFEGANSGELKVRIVVKEWQFSDGSHSLNNHRPSSQQSLNGSSDLLSRTGRKLKITVVEAKELATKDRCGKIDPYIKLQYGKVVKRTNIAPPPTSPNPVWNHSFEFDENSGDEYLNVKCFSEEIFGDENIGNAHVNLEGLVDGSIKDVWIPLEGVSSGELRLKIEVIRMQDQEGSRGLANGWIELVLIEARDLIAADLRGTSDPYVRVNYGNLKKRTKVVHKTLNPRWNQTLEFLEDGSPLTLHVKDHNALLPTSSIGECVVEYQMLPPNQMSDKWIPLQGVKSGEIHIQITRKVPQMQTRHSPESEPSLSKLHQIPSQIKEMMKKFRSLIEDRNVEGLSTILSELETLEDTQEGYITQLETEQTLLLSKINELGQAIINSSPSPSRTTSLSPTGN. 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06849 827 ProSiteProfiles C2 domain profile. 462 581 IPR000008 -
Seca12g06849 827 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 482 599 IPR035892 -
Seca12g06849 827 PANTHER OS01G0128800 PROTEIN 12 821 - -
Seca12g06849 827 CDD SMP_SF 120 283 - -
Seca12g06849 827 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 97 286 IPR031468 GO:0008289
Seca12g06849 827 CDD C2 299 403 - -
Seca12g06849 827 SMART C2_3c 613 707 IPR000008 -
Seca12g06849 827 SMART C2_3c 483 580 IPR000008 -
Seca12g06849 827 SMART C2_3c 298 408 IPR000008 -
Seca12g06849 827 CDD C2 614 710 - -
Seca12g06849 827 ProSiteProfiles C2 domain profile. 587 708 IPR000008 -
Seca12g06849 827 Pfam C2 domain 297 401 IPR000008 -
Seca12g06849 827 Pfam C2 domain 614 710 IPR000008 -
Seca12g06849 827 Pfam C2 domain 483 583 IPR000008 -
Seca12g06849 827 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 290 404 IPR035892 -
Seca12g06849 827 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 608 723 IPR035892 -
Seca12g06849 827 Gene3D C2 domain 602 725 IPR035892 -
Seca12g06849 827 Gene3D C2 domain 467 601 IPR035892 -
Seca12g06849 827 Gene3D C2 domain 289 408 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06849 Seca-Chr12 160449087 160455743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06849 484 747 Lipid Metabolism Gene Families AT3G57880 25.000 3.53e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06849 - - ccaj:109803570 1311.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06849 12 160449087 160455743 Seca12g06849 12 160449087 160455743 ECH
Seca12g06849 12 160449087 160455743 Seca12g06849 12 160449087 160455743 PCT