Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06848 ATGAAAATGGGTTTGAGCAATGCCACTATGTTACTCACTTCACCATCTTCTTCCACTTTCTTCTTCTTCTACTCATCCTCTCATTCCAAATTCAAATTCATTCCCATTCCTATTCGAATTCTCACTCTCAGTTCCTTCTCTTCTCTCGGAACCACACACACTTCTGCCACCAAATGGCCCAATCCCACAAAGGTTCCCGATGATGACTTGTTTGACCCTCTTCCCTCTCCCTCTTTCCACACCGATAAACCCCCCAACGCCATTGACCGAATCGTTCACCGCTTAAGGATCTTAGGGTCACCTTCCGACGATGACGAACCAACCAGAGATTATTTCTTGCGGCGAGAATGGGTTCGCCCTGATACTCCTTTGGCGGAGGAGGTTTTGCCATGGGAGAAGGAGGACCAGCAGCAGCAGGAGAAGGAAGAGAAGGGGTTGAGGAAGAAGAAGGTAAAGGCTCCATCTTTGGCCGAGCTGAAACTTGGGGTGGAGGAGGTGAAGCGATTGCGAACACTAGGAATGCATGTTAAGGAGAGGATCAGTGTTCCCAAGGCTGGCCTCACGCAGTCCGTGCTCGACAAGATTCATCATCAGTGGAAGAACAATGAGTTGGTGAGGCTCAAGTTTCATGAGCTCCTTGCTCAGAATATGAAGTTGGCTCATCAAATTGTTGAGCGTAGAACGAGAGGGTTAGTTATATATAGGTCAGGAAGTGCTATGTGGGTGTACCGTGGTAGGAATTATGAAGGGCCAACACCCAGCAGCCAACTGAGTCAAAAGGGAGGTGATAATCGCCTTTTACCAGATGTCTCTCTGGAAAGAAATGAAACTTCTTCAACACTGGAAAATAGTGAGCCAATTGTATGGAATCAAGAACAGCCTGAGAACATGACACCAGAGGAAGCAGAGTTTGACAGGATGCTTGATGGTTTCGGTCCTCGATTTGTTGGATGGTGGGGTACTGGAATACTTCCTGTTGATGCTGATTTACTTCCTCCTATGGTTCCGGGTTACAAAACACCTCTTAGGCTTCTTCCTGCTGGAATGCGTCCACGACTAACCAATGATGAGCTGACAAATATGCGGAAACTTGCCAAAGCTCTTCCTTCTCATTTTGCCTTAGGTAGAAATAGAAATCTTCAAGGTCTGGCGTGTGCTATTCTTAAACTTTGGGAGAAAAGCTTAGTTGCAAAGATTGCTATCAAGCGTGGTATCCAAAATACAAACAATGAACTGATGGCTGAGGAGCTGAAGAAATTAACAGGAGGTACCTTGTTGCTAAGGAATAAATTTTACATTGTAATATATCGTGGGAGGGACTTTGTTCCAACCAGTGTGGCTGCTGTTTTAGCTGAAAGACAGCAATTGAGGAAACAGGTGCAGGAAGTTGAGGAGAAGGTGCGGTGCAGAGCTATTGATGTAACTCCATCAGGGGAAGATGAAGCAACTTCTCATACAGGATCATTGGCTGAGTTCTATGAGGCTCAGGCATCATGGGGAAGGGATATATCTACTGAAGAACGTAAGAAGATGATGAAAGAGGCTGCTGAAGCCAAGAATGTTAAGCTTGTCAAAAAAATTGAACGTAAATTAGCTGTTGCCCAGGCCAAAAGGCTAAAAGCAGAAAAGTTATTAGCTAAAATAGAAGCGTCCATGGTTCCAGCTGGTCCTGATAATGACCGGGAAACAATCACAGATGAAGAACGTGTTATGTTCCGTGAGGTTGGTTTAAGAATGAAAGCATACTTGCAACTTGGTACACGTGGTGTCTTTGATGGTGTCATTGAGAATATGCATTTGCATTGGAAACATCGAGAACTTGTTAAATTAATCACAAAACAAAAGACCCTTGCTTTTGTTGAAGACACAGCTAGGTTACTGGAATATGAGAGTGGCGGAATACTAGTAGCAATAGATAGACTTCCCAAAGGATTCTCTCTTATCTACTATCGTGGAAAGAATTATAGGCGCCCCCTTACTCTGCGGCCTAGAACCCTTTTGACGAAAGCAAAAGCATTGCAGCGTTCAATAGCCATGCAACGGCATGAGGTTCTAATTTTTTATATGACAATTAAAAAATTATTTTTCACTTTATATATCTGTGACAACATTTGA 2115 0.4392 MKMGLSNATMLLTSPSSSTFFFFYSSSHSKFKFIPIPIRILTLSSFSSLGTTHTSATKWPNPTKVPDDDLFDPLPSPSFHTDKPPNAIDRIVHRLRILGSPSDDDEPTRDYFLRREWVRPDTPLAEEVLPWEKEDQQQQEKEEKGLRKKKVKAPSLAELKLGVEEVKRLRTLGMHVKERISVPKAGLTQSVLDKIHHQWKNNELVRLKFHELLAQNMKLAHQIVERRTRGLVIYRSGSAMWVYRGRNYEGPTPSSQLSQKGGDNRLLPDVSLERNETSSTLENSEPIVWNQEQPENMTPEEAEFDRMLDGFGPRFVGWWGTGILPVDADLLPPMVPGYKTPLRLLPAGMRPRLTNDELTNMRKLAKALPSHFALGRNRNLQGLACAILKLWEKSLVAKIAIKRGIQNTNNELMAEELKKLTGGTLLLRNKFYIVIYRGRDFVPTSVAAVLAERQQLRKQVQEVEEKVRCRAIDVTPSGEDEATSHTGSLAEFYEAQASWGRDISTEERKKMMKEAAEAKNVKLVKKIERKLAVAQAKRLKAEKLLAKIEASMVPAGPDNDRETITDEERVMFREVGLRMKAYLQLGTRGVFDGVIENMHLHWKHRELVKLITKQKTLAFVEDTARLLEYESGGILVAIDRLPKGFSLIYYRGKNYRRPLTLRPRTLLTKAKALQRSIAMQRHEVLIFYMTIKKLFFTLYICDNI. 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06848 704 SUPERFAMILY YhbY-like 353 444 IPR035920 -
Seca12g06848 704 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 110 688 IPR045278 GO:0000375|GO:0003729
Seca12g06848 704 SUPERFAMILY YhbY-like 160 252 IPR035920 -
Seca12g06848 704 Coils Coil 524 544 - -
Seca12g06848 704 SMART CRS1_YhbY_2 161 244 IPR001890 GO:0003723
Seca12g06848 704 SMART CRS1_YhbY_2 564 651 IPR001890 GO:0003723
Seca12g06848 704 SMART CRS1_YhbY_2 353 437 IPR001890 GO:0003723
Seca12g06848 704 ProSiteProfiles CRM domain profile. 562 662 IPR001890 GO:0003723
Seca12g06848 704 Coils Coil 446 466 - -
Seca12g06848 704 FunFam CRM-domain containing factor CFM3B, chloroplastic 563 665 - -
Seca12g06848 704 ProSiteProfiles CRM domain profile. 159 255 IPR001890 GO:0003723
Seca12g06848 704 Gene3D - 352 445 IPR035920 -
Seca12g06848 704 Gene3D - 159 256 IPR035920 -
Seca12g06848 704 Gene3D - 563 662 IPR035920 -
Seca12g06848 704 MobiDBLite consensus disorder prediction 128 149 - -
Seca12g06848 704 FunFam CRS2-associated factor 1, chloroplastic 160 255 - -
Seca12g06848 704 ProSiteProfiles CRM domain profile. 351 448 IPR001890 GO:0003723
Seca12g06848 704 FunFam CRS2-associated factor 1, chloroplastic 352 448 - -
Seca12g06848 704 Pfam CRS1 / YhbY (CRM) domain 565 651 IPR001890 GO:0003723
Seca12g06848 704 Pfam CRS1 / YhbY (CRM) domain 164 244 IPR001890 GO:0003723
Seca12g06848 704 Pfam CRS1 / YhbY (CRM) domain 353 437 IPR001890 GO:0003723
Seca12g06848 704 SUPERFAMILY YhbY-like 563 661 IPR035920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06848 Seca-Chr12 160441410 160448033 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06848 - - gmx:100776626 850.892
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06848 12 160441410 160448033 Seca12g06848 12 160441410 160448033 ECH
Seca12g06848 12 160441410 160448033 Seca12g06848 12 160441410 160448033 PCT