Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06809 ATGGCTTGCAACAATTGCTCTTCAACTCGGTCGTCTTGGCTCATAGTCTCATCCTCATCCACCAAAACCACCAAACGCGATCCCTTGTTGTTCGTCCCAACCTGTTTCAAATTCAATGTCCCCACTGCTTCACAAATTCAGTGGCGTTCCAGTTCTTATACCCGCAGATACTTCCGTCAGCCTCACGAAATCCAACGCCATTGGGTTGAAGCAGCTGAAGATCAACCACTCACATCTCCAGAGAGATTCACCGTGGCGTCATATAACATACTGGCGGATAGAAATGCTTCTCAGCACAGAGATTTATACGTAAAGGTTCCTTCTCGTTACATCAACTGGGATCGCCGTAAGAGAGTTATTTGTAATGAACTCTTTGGATGGGACCCTGATATTATCTGTTTACAAGAGGTGGACAAGTATTTTGAACTCTCAAACATTTTGGTTAAAGCAGGATATGCAGGATCTTATAAGAGACGCACTGGAGATACAGTTGACGGTTGTGCAATGTTCTGGAAAGCTGATAAGTTCCGGTTATTGGATGGAGAGAGTATTCAATTTAAGGACATTGGCCTCCGTGATAATGTTGCTCAACTTCTAGTTTTTGAGATGTGTGAATCTGACTCAAGGAGACTGTTAGTTGGTAACATCCACGTGCTTTACAACCCAAACAGGGGAGAAGTCAAATTAGGTCAAATTCGTTTTCTCTCGTCAAGAGCACAGACCCTCTCAGAGAAATGGGGTAATGCCCCCGTTGTCCTAGCTGGCGATTTTAATAGTACTCCTCAGAGTGGAATATACAAGTTCTTGTCATCATCTGAGCTTGATATCATGCTATATGACAGAAAGGAGATATCTGGACAGAAACGCTGTCGTCCTGCTCAAGTCTTAGATGAGAGAAAAGACACAGTTGGTCCATTTATCTTACTGGATGGGCTACTGTTTCCAGATTGTTAA 954 0.434 MACNNCSSTRSSWLIVSSSSTKTTKRDPLLFVPTCFKFNVPTASQIQWRSSSYTRRYFRQPHEIQRHWVEAAEDQPLTSPERFTVASYNILADRNASQHRDLYVKVPSRYINWDRRKRVICNELFGWDPDIICLQEVDKYFELSNILVKAGYAGSYKRRTGDTVDGCAMFWKADKFRLLDGESIQFKDIGLRDNVAQLLVFEMCESDSRRLLVGNIHVLYNPNRGEVKLGQIRFLSSRAQTLSEKWGNAPVVLAGDFNSTPQSGIYKFLSSSELDIMLYDRKEISGQKRCRPAQVLDERKDTVGPFILLDGLLFPDC. 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06809 317 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 54 292 - -
Seca12g06809 317 SUPERFAMILY DNase I-like 75 278 IPR036691 -
Seca12g06809 317 Gene3D Endonuclease/exonuclease/phosphatase 57 306 IPR036691 -
Seca12g06809 317 Pfam Endonuclease/Exonuclease/phosphatase family 86 269 IPR005135 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06809 Seca-Chr12 160028664 160033955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06809 83 271 EF-hand Containing Proteins AT5G54130 28.431 1.70e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06809 - - gmx:100779393 493.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06809 12 160028664 160033955 Seca12g06809 12 160028664 160033955 ECH