Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06621 ATGGCGATCCCTTCACAATCCACCGCAAGCTTCTCACCTTCCTTCATCTCCACTCCCAACGATTTGACTCGGCTAACCCGCTTCCCCTGCCGCGTCACCTTCACTCACCAAACTCGCTCTTCAACTCGTCGACTCGCTGTGTCTTCTCGCCTCAACTCGTCTAAATCCTCCGATGCCGGTGGCTCTGTCTCGCCGGAAAACGGCCCCTACGAGCTCCACCACGATTTTTCGCCGCAGCGTCGGAGGCGAGGATCGCCTGTGTTCGTGACGCTCCCTGTGAATTCCGTGGGTAGAGAGGGGAAGGTTTGGAGGCCCAAAGCGATGATGCTGTCGCTTAGGGCGCTCGCAGCGGCAGGTGTAGAAGGCGTGGTTGTGGAGATTTGGTGGGGATTGGTTGAGAGGAATGGGCCTAGGGTTTATGATTGGAGAGGGTATCGTGAACTCGTCATGATGGCTTGCATGTGTGGCCTAAAGGTTCGAGCTGTTCTTGCGTTCCATCAACACGGCACAGGCCCTGATGATCCTAATTGGATACCACTTCCTCTGTGGGTGCTTGATGAGATGCATAAAGATCCAGATTTAGCATATTCTGACAGGTTTGGAAGAAGAAATATTGAATACATTTCCCTTGGATGTGATATTCTTCCTGTGCTACGTGGACGTTCTCCTATTCAAGCATATGCAGATTTTATGAGGGACTTCAGGGACACTTTCAGGCCTTCACTTGGTTTTATCATTACAGGTGTACAGATTGGCATGGGTCCTGCTGGTGAACTAAGATATCCTTCATTCTCTTTCCAAAAGCCACATTTGGCTTGGTCACATGAACTTGGAGAGTTTCAGTGCTATGATAAGTATATGCTTGCTTCTCTAAATGCCTCTGCAAGAAGTATTGGAAAGCGTGAATGGGGAAATGGTGGGCCATTTGGTACTGGAAGTTTGATGCAAAATCCCGAGCACACTGAATTTTTTAGAAATGAGGGTGGCTCTTGGAACACACCATATGGTAAATTTTTCCTTGAATGGTACTCGGATATGCTGCTACTGCATGGAGAGAGAATTTGTCGGGAAGCTGAAACTATATTTAGGGGTACAGAAATCCATATATCAGCAAAATTGGCCGCCATTCACTGGCACTATGTCACACAATCCCATCCATCAGAGTTAACTGCAGGCTATTATAATACTTTTGACAAGGATGGATACTTACCCATTGCTCGCATGTTTAGTAAGTATGGATTCTCAATGTGCTGCTCTTGTTTTGAAATGCAAGATGCAGTGATGAAGAAGATCAATCCAGATGGTAGCCCTGAAGGTTTTCTTAGACAGCTTTTGCTTGCTGCTAGGCTCTGTGACATATCACTTGAAGGTCAAAATTTTTCAACTGATTTGGATGATGATGCATTTGCCCAGGTGCTGAAGATGTCAAAATTTTACTCGAATGGGTTTGAGAAGCGCCCCTTCTCATTCAATTTCGTAAGAATGAACAAAAAAATGTTTGAACCCCGAAATTGGGATCGGTTTACTCGTTTTGTGAAGCAAATGTCTGATGGAAACATTTTTCGAGCCAGATTAAATTCTGTAGGTGACATACGGTTGAAGACCACACCAGTGGCTGCAGAAGTGGGACTGTTGTACCAGCTATACCAGCACTCTTGA 1659 0.4623 MAIPSQSTASFSPSFISTPNDLTRLTRFPCRVTFTHQTRSSTRRLAVSSRLNSSKSSDAGGSVSPENGPYELHHDFSPQRRRRGSPVFVTLPVNSVGREGKVWRPKAMMLSLRALAAAGVEGVVVEIWWGLVERNGPRVYDWRGYRELVMMACMCGLKVRAVLAFHQHGTGPDDPNWIPLPLWVLDEMHKDPDLAYSDRFGRRNIEYISLGCDILPVLRGRSPIQAYADFMRDFRDTFRPSLGFIITGVQIGMGPAGELRYPSFSFQKPHLAWSHELGEFQCYDKYMLASLNASARSIGKREWGNGGPFGTGSLMQNPEHTEFFRNEGGSWNTPYGKFFLEWYSDMLLLHGERICREAETIFRGTEIHISAKLAAIHWHYVTQSHPSELTAGYYNTFDKDGYLPIARMFSKYGFSMCCSCFEMQDAVMKKINPDGSPEGFLRQLLLAARLCDISLEGQNFSTDLDDDAFAQVLKMSKFYSNGFEKRPFSFNFVRMNKKMFEPRNWDRFTRFVKQMSDGNIFRARLNSVGDIRLKTTPVAAEVGLLYQLYQHS. 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06621 552 Pfam Glycosyl hydrolase family 14 88 511 IPR001554 GO:0000272|GO:0016161
Seca12g06621 552 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 37 518 IPR001554 GO:0000272|GO:0016161
Seca12g06621 552 Gene3D Glycosidases 77 540 - -
Seca12g06621 552 SUPERFAMILY (Trans)glycosidases 84 544 IPR017853 -
Seca12g06621 552 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 367 383 IPR001554 GO:0000272|GO:0016161
Seca12g06621 552 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 162 183 IPR001554 GO:0000272|GO:0016161
Seca12g06621 552 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 402 425 IPR001554 GO:0000272|GO:0016161
Seca12g06621 552 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 140 158 IPR001554 GO:0000272|GO:0016161
Seca12g06621 552 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 331 350 IPR001554 GO:0000272|GO:0016161
Seca12g06621 552 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 254 276 IPR001554 GO:0000272|GO:0016161
Seca12g06621 552 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 384 395 IPR001554 GO:0000272|GO:0016161
Seca12g06621 552 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 119 133 IPR001554 GO:0000272|GO:0016161
Seca12g06621 552 MobiDBLite consensus disorder prediction 41 81 - -
Seca12g06621 552 MobiDBLite consensus disorder prediction 41 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06621 Seca-Chr12 158265273 158269018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06621 71 518 Glycoside Hydrolase AT4G17090 49.889 7.15e-155 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06621 K01177 - gmx:100805981 942.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06621 12 158265273 158269018 Seca12g06621 12 158265273 158269018 ECH