Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06618 ATGCCGGGTCTCGTAAAGACTCCACCGGAGGCACCACCGCTCCGAATCTCCATGCCCGAAACCCCGACCCAAAGATCCGAACCCGTAAACACCAAAACTCCATCTCCCTCGTCACTTCCTAAGAAACCTCCGTCCCCTTCTCCTTCCTCCCGGTCTAAGAAGAAGACTCCAGAAACCCCTACCAACCCTGCTCTGTCTGAGGCCTCTCTAGACAACCCGGATCTGGGCCCATTCCTCCTTAAGCTGGCCCGAGACACCATCGCCTCAGGCGAAGGGCCCACTAAGGCCCTCGACTACGCCATCCGGGCCTCCAAGTCATTCGAGCGCTGCGCCGTCGAAGGCGAGCCCAGCCTCGACCTTGCCATGAGCCTCCACGTCCTCGCCGCCATCTACTGCAGCCTGGGCCGGTTCGAGGAAGCGGTTCCGGTTCTGGAGCGCGCGATCCAAGTCCCTGACGTGGCAAGAGGTCCAGATCACGCCCTCGCTGCTTTCTCCGGTTACATGCAGTTAGGTGACACCTTCTCCATGCTTGGTCAAGTTGATAAATCCATCTCCTGCTATGACCAAGGCCTTCAAATTCAGATCCAAACCTTAGGCGAAACCGATCCTCGCGTCGGTGAAACTTGCCGTTACTTGGCTGAAGCCAATGTTCAAGCGATGCAGTTTGACAAAGCAGAGGAACTCTGCAAGAAAACGCTCGAGATTCATCGCGCGCACAGCGAACCTGCGTCTCTTGAAGAAGCTGCTGATAGAAGGCTCATGGCGCTTATATGTGAGGCCAAGGGAGATTACGAATCGGCACTTGAGCACCTTGTTCTCGCCAGCATGGCGATGATTGCGAATGGACAGGATAACGAAGTTGCTTCCATTGATGTAAGCATTGGAAACATTTACATGTCTCTCTGTCGTTTCGATGAGGCTATATTCTCTTACCAGAAGGCGCTTACCGTGTTCAAATCCTCCAAGGGAGAAAATCACCCTTCCGTTGCGTCTGTGTTCGTGCGCCTTGCTGATTTGTATCACAGGACTGGGAAGCTTCGAGAATCCAAGTCTTATTGTGAGAACGCTATGAGGATATACTCTAAACCGGTGCCTGGAACAACGGCGGAGGAGATTGCCGGTGGATTGACGGAAGTTTCGGCGATTTTTGAATCGGTGGATGAGCCGGAGGAGGCGCTGAAGCTGTTGCAGAAGGCGATGAAATTGTTGGAGGATAAACCGGGACAGCAGAGCACGATTGCAGGGATAGAAGCGCGAATGGGAGTGATGTATTACATGATTGGGAGGTACGAAGATGCGAGAAGCTCTTTTGAGAGTGCTGTGGCGAAACTCAGGGCTAGCGGGGAAAGGAAGTCTGCGTTCTTTGGAGTTGTTTTGAATCAGATGGGATTGGCGTGTGTGCAACTGTTCAAGATAGATGAGGCTGCTGAATTGTTTGAAGAAGCTAGGGGAATTCTTGAACAGGAGTGTGGCCCCTGTCATCAAGATACTCTCGGAGTATACAGCAATCTTGCCGCAACTTATGATGCTATGGGAAGGAGTGGGAGATGCAATTGA 1557 0.5279 MPGLVKTPPEAPPLRISMPETPTQRSEPVNTKTPSPSSLPKKPPSPSPSSRSKKKTPETPTNPALSEASLDNPDLGPFLLKLARDTIASGEGPTKALDYAIRASKSFERCAVEGEPSLDLAMSLHVLAAIYCSLGRFEEAVPVLERAIQVPDVARGPDHALAAFSGYMQLGDTFSMLGQVDKSISCYDQGLQIQIQTLGETDPRVGETCRYLAEANVQAMQFDKAEELCKKTLEIHRAHSEPASLEEAADRRLMALICEAKGDYESALEHLVLASMAMIANGQDNEVASIDVSIGNIYMSLCRFDEAIFSYQKALTVFKSSKGENHPSVASVFVRLADLYHRTGKLRESKSYCENAMRIYSKPVPGTTAEEIAGGLTEVSAIFESVDEPEEALKLLQKAMKLLEDKPGQQSTIAGIEARMGVMYYMIGRYEDARSSFESAVAKLRASGERKSAFFGVVLNQMGLACVQLFKIDEAAELFEEARGILEQECGPCHQDTLGVYSNLAATYDAMGRSGRCN. 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06618 518 SUPERFAMILY TPR-like 284 405 IPR011990 GO:0005515
Seca12g06618 518 SUPERFAMILY TPR-like 116 269 IPR011990 GO:0005515
Seca12g06618 518 MobiDBLite consensus disorder prediction 49 68 - -
Seca12g06618 518 Gene3D Tetratricopeptide repeat domain 69 165 IPR011990 GO:0005515
Seca12g06618 518 SUPERFAMILY TPR-like 414 514 IPR011990 GO:0005515
Seca12g06618 518 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 28 513 - -
Seca12g06618 518 MobiDBLite consensus disorder prediction 19 36 - -
Seca12g06618 518 Pfam Tetratricopeptide repeat 287 361 - -
Seca12g06618 518 ProSiteProfiles TPR repeat profile. 288 321 IPR019734 GO:0005515
Seca12g06618 518 Gene3D Tetratricopeptide repeat domain 166 274 IPR011990 GO:0005515
Seca12g06618 518 Gene3D Tetratricopeptide repeat domain 275 455 IPR011990 GO:0005515
Seca12g06618 518 Gene3D Tetratricopeptide repeat domain 456 516 IPR011990 GO:0005515
Seca12g06618 518 SMART tpr_5 456 489 IPR019734 GO:0005515
Seca12g06618 518 SMART tpr_5 288 321 IPR019734 GO:0005515
Seca12g06618 518 SMART tpr_5 330 363 IPR019734 GO:0005515
Seca12g06618 518 SMART tpr_5 164 197 IPR019734 GO:0005515
Seca12g06618 518 SMART tpr_5 121 154 IPR019734 GO:0005515
Seca12g06618 518 SMART tpr_5 248 281 IPR019734 GO:0005515
Seca12g06618 518 SMART tpr_5 373 406 IPR019734 GO:0005515
Seca12g06618 518 SMART tpr_5 414 447 IPR019734 GO:0005515
Seca12g06618 518 SMART tpr_5 206 239 IPR019734 GO:0005515
Seca12g06618 518 MobiDBLite consensus disorder prediction 1 16 - -
Seca12g06618 518 MobiDBLite consensus disorder prediction 1 72 - -
Seca12g06618 518 Pfam MalT-like TPR region 125 274 IPR041617 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06618 Seca-Chr12 158255063 158259160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06618 121 333 Glycosyltransferase AT3G04240 25.000 3.95e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06618 - - gmx:100815100 871.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06618 12 158255063 158259160 Seca12g06618 12 158255063 158259160 ECH