Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06614 ATGGCCTCTTTCTCACTCAATTCAATTACTCTTTCATCTTCTTCCCTTAACATTCCTCATTCTCACTCCACATCTTCCTCCAGAATTTTCGCATTCTCTTGCAGCCTCAAACCTCTGTTTGCTGAATCAAAATCCCACTTTCACCAAAAGAGATACAATTCTGGCTTTTCCGTTAAAGCCCAAACCCTAGACTTTTCCGGTTCTTTCTTCGAAGGCGGATTCGGGTCGGAAGATGACCCTAATTCTCCCGGACCCGGGTTCACTACTGCTGTAGAGGAGAAGGAGGAGCCTCAATGCCCGCCAGGACTCAGACAGTACGAAACAATGGCGGTTTTGAGGCCTGACATGTCCGAGGATGAGCGACTTGCACTCACCCAGAAGTACGAGGAGCTGCTTGTTGCTGGAGGTGGCATGTATGTAGAGGTTTTTAACAGAGGAGTTATTCCACTAGCATATAGCATCAAGAAGAAAAACAAGGCAGGAGAGACCAACACTTATTTGGATGGCATTTACCTCCTATTCACCTACTTCACGAAACCTGAATCCATAACCGCCCTTGAGGAGACACAATTGGCGGATGATGATGTTATCCGATCAACGACCTTCAAAATAAAGAAAAGGAAATATTAG 630 0.4556 MASFSLNSITLSSSSLNIPHSHSTSSSRIFAFSCSLKPLFAESKSHFHQKRYNSGFSVKAQTLDFSGSFFEGGFGSEDDPNSPGPGFTTAVEEKEEPQCPPGLRQYETMAVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIKKKNKAGETNTYLDGIYLLFTYFTKPESITALEETQLADDDVIRSTTFKIKKRKY. 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06614 209 SUPERFAMILY Ribosomal protein S6 103 207 IPR035980 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Seca12g06614 209 CDD bS6_chloro_cyano 103 204 - -
Seca12g06614 209 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 94 209 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Seca12g06614 209 MobiDBLite consensus disorder prediction 74 101 - -
Seca12g06614 209 Gene3D - 102 209 IPR014717 -
Seca12g06614 209 FunFam 30S ribosomal protein S6 alpha, chloroplastic 102 209 - -
Seca12g06614 209 Hamap 30S ribosomal protein S6 [rpsF]. 103 206 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Seca12g06614 209 Pfam Ribosomal protein S6 105 203 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06614 Seca-Chr12 158218300 158220736 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06614 K02990 - gmx:100305490 297.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06614 12 158218300 158220736 Seca12g06614 12 158218300 158220736 ECH