Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06603 ATGAGCGATCTACCATTCTTGCTTTGGAGACTTCCTTCCTGTTGGGGCTCTGGTCAGAACTGGCTTCCAGTTCTATCTTCCAGCAGCTTCAATGCTGCGTTCCTCAATACTTTCCTGCAGTATTCGAGCAATTGGTCCATCATGTTAGTTAAAGTGGCTCAAGTACTATCCAAGATTGTCCTGCCTAACTTGTCACTTTATGCTAAAGTGGTCTATGTTGTTAGTTACCTCATGCTACTCCATGTGAGATTTACTGTGAATGAGGTTGAGGCATTATTTGACTTGTTTAAGAAACTAAGCAGCGCAATTATTGATGATGGCTTGATTCACAAGGAGGAGTTCCAACTAGCACTTTTTAGAAATAGTGGCAAGCAGAATCTATTTGCAAACAGGGTATTTGATATGTTTGATATTAAACGTAATGGAGTAATTGACTTTGGGGAATTTGTTCGCTCACTAAGCGTCTTTCATCCAAATGCACCTGAAGAGAAGAAAGTTGAATATGCATTCAAATTGTTTGACCTTCGGCAGACTGGATACATTGAGTATATTGAGTTGAAGGAGATGGTCTTGGCTATTTTGACTGAATCAGATATTACAGTTCCAGATGATGTTGTTGAATCCATTGTGGAAAAGACAATGAAGGAGGTGGACTCAAAAGGAGATGGGAAGATTGATACGGAAGAGTGGAAAGATTTTGCAGCAAAAAATCATTCTCTTCTGAAGATTATGACTCTACCATCTCTAAGACTTCAGCATGAAGATTTTGCAGTTCTTGCTGCACAAACCTATTTTAATATTTCTGAAATTGAAGCATTGTATGATCTGTTCAAGAAATTAAGCAGCTCCATGCAGAGTAATATTGAATATATGCAGGAAGAGTTTCAGCTTGGCTTATTTGGAAGCAGCAAGAAACGAAGCCTCTTTGCTGACAGGGTGTTCCATTTATTTGACTCAAAAAATGATGGTGTGATAGAATTTGGAGAGTTTGTTAGAGGTCTAAGCGTGTTCCATCCAGCAGCGCCACAAGCACAAAAAGCAGCTTTTGCATTTCGACTCTATGATATATGGCAAAGAGGCTTTATTGAACGTCAAGAGGTAAGAGAGATGATAGAGGCACTACTAAGAGAGTTCGATTTGGTTCTTTCTCGTGACATAATTGAAGTCATAATTGATAAGGCCTTTAAAGAAGCAGATTTAAAAGGAGATGGAAGGATTGATCCAGAGGAATGGGAAGAATTTGTGGCTCGAAATCCATCCTTACTTAAGAATATGACAATTCCATATTTGAAGGATCTTAATACGCAGTTTCCAAATTTTGAACTCATATCAGACATTGAAGATGATATCAGCGAAATCTAA 1362 0.3847 MSDLPFLLWRLPSCWGSGQNWLPVLSSSSFNAAFLNTFLQYSSNWSIMLVKVAQVLSKIVLPNLSLYAKVVYVVSYLMLLHVRFTVNEVEALFDLFKKLSSAIIDDGLIHKEEFQLALFRNSGKQNLFANRVFDMFDIKRNGVIDFGEFVRSLSVFHPNAPEEKKVEYAFKLFDLRQTGYIEYIELKEMVLAILTESDITVPDDVVESIVEKTMKEVDSKGDGKIDTEEWKDFAAKNHSLLKIMTLPSLRLQHEDFAVLAAQTYFNISEIEALYDLFKKLSSSMQSNIEYMQEEFQLGLFGSSKKRSLFADRVFHLFDSKNDGVIEFGEFVRGLSVFHPAAPQAQKAAFAFRLYDIWQRGFIERQEVREMIEALLREFDLVLSRDIIEVIIDKAFKEADLKGDGRIDPEEWEEFVARNPSLLKNMTIPYLKDLNTQFPNFELISDIEDDISEI. 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06603 453 FunFam calcineurin B-like protein 3 76 256 - -
Seca12g06603 453 CDD EFh 351 416 IPR002048 GO:0005509
Seca12g06603 453 SUPERFAMILY EF-hand 81 247 IPR011992 -
Seca12g06603 453 ProSiteProfiles EF-hand calcium-binding domain profile. 305 340 IPR002048 GO:0005509
Seca12g06603 453 ProSiteProfiles EF-hand calcium-binding domain profile. 205 240 IPR002048 GO:0005509
Seca12g06603 453 ProSiteProfiles EF-hand calcium-binding domain profile. 386 421 IPR002048 GO:0005509
Seca12g06603 453 ProSiteProfiles EF-hand calcium-binding domain profile. 342 377 IPR002048 GO:0005509
Seca12g06603 453 ProSiteProfiles EF-hand calcium-binding domain profile. 124 159 IPR002048 GO:0005509
Seca12g06603 453 Pfam EF-hand domain pair 164 230 IPR002048 GO:0005509
Seca12g06603 453 FunFam calcineurin B-like protein 3 257 448 - -
Seca12g06603 453 Pfam EF hand 131 151 IPR002048 GO:0005509
Seca12g06603 453 Pfam EF hand 391 415 IPR002048 GO:0005509
Seca12g06603 453 Pfam EF hand 311 332 IPR002048 GO:0005509
Seca12g06603 453 CDD EFh 165 235 IPR002048 GO:0005509
Seca12g06603 453 Gene3D - 257 449 - -
Seca12g06603 453 Gene3D - 79 256 - -
Seca12g06603 453 ProSiteProfiles EF-hand calcium-binding domain profile. 161 196 IPR002048 GO:0005509
Seca12g06603 453 PANTHER CALCINEURIN B 253 447 IPR045198 GO:0005509|GO:0019722|GO:0019900
Seca12g06603 453 SMART efh_1 309 337 IPR002048 GO:0005509
Seca12g06603 453 SMART efh_1 128 156 IPR002048 GO:0005509
Seca12g06603 453 SMART efh_1 165 193 IPR002048 GO:0005509
Seca12g06603 453 SMART efh_1 390 418 IPR002048 GO:0005509
Seca12g06603 453 SMART efh_1 209 237 IPR002048 GO:0005509
Seca12g06603 453 SMART efh_1 346 374 IPR002048 GO:0005509
Seca12g06603 453 SUPERFAMILY EF-hand 257 437 IPR011992 -
Seca12g06603 453 PRINTS Recoverin family signature 251 265 - -
Seca12g06603 453 PRINTS Recoverin family signature 360 378 - -
Seca12g06603 453 PRINTS Recoverin family signature 406 426 - -
Seca12g06603 453 PRINTS Recoverin family signature 313 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06603 Seca-Chr12 158120050 158127695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06603 263 453 EF-hand Containing Proteins AT5G24270 58.115 1.34e-73 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06603 K06268 - vra:106766823 427.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06603 12 158120050 158127695 Seca12g06603 12 158120050 158127695 ECH