Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06599 ATGGAGAACCTAATATCTTTGGTGAACAAAATCCAGAGAGCTTGCACCGCCTTAGGTGATCACGGCGAAGCTAGTGCACTCCCTACTCTCTGGGACTCCCTTCCTGCCATCGCCGTCGTAGGTGGCCAGAGTTCTGGAAAGTCCTCAGTCTTAGAGAGCGTTGTCGGCAAAGATTTCTTACCTCGTGGATCAGGGATTGTTACTCGGCGACCGCTCGTCTTGCAGCTTCATAAGATTGAAGAGGGAAGCAGAGAGTATGCAGAGTTCCTTCACCTCCCGAGGAAAAGGTTCACTGATTTTGTTGCCGTGAGAAAGGAAATCCAGGATGAAACTGACAGAGAGACTGGACGAACCAAACAAATTTCAAGTGTCCCTATTCATCTCAGCATATATTCTCCTAATGTTGTTAACTTGACACTCATTGATCTTCCTGGGCTTACAAAGGTAGCTGTAGAGGGTCAACCTGATAGTATTGTGCTAGACATTGAGAATATGGTTCGCTCCTACATTGAGAAGCCAAACTGTATAATTTTGGCTATTTCACCAGCTAATCAAGATCTTGCAACATCAGATGCAATTAAAATTTCTCGCGAAGTGGATCCTACTGGGGACAGGACCATTGGAGTTTTGACAAAGATCGATCTTATGGACAAGGGCACTGATGCTGTTGATATATTGGAAGGGAGAGCATATAGGTTAAAGTTTCCCTGGATTGGTGTTGTGAATAGATCACAAGCAGACATAAACAAGAATGTTGACATGATTGCTGCTAGGCGTAGAGAACGTGAATACTTTAATAGTACCCCTGAATATAAACACCTTGCTCACAGAATGGGTTCTGAACATCTGGCAAAGATGCTCTCGAAGCATTTGGAAACAGTAATCAAGTCCAAAATTCCAGGCATTCAGTCTCTTATTAACAAAACAATTGCTGAACTTGAGGCCGAATTGACTCGTTTAGGAAAGCCTGTTGCAGCTGATGCTGGGGGCAAGTTATATTCAATCATGGAAATATGCCGCTCATTTGATCAAATATTTAAAGATCATCTTGATGGAGTGCGGCCCGGAGGTGATAAAATTTATAATGTCTTTGACAATCAGCTCCCTGCTGCTTTGAAAAGGTTACAGTTTGATAAACAACTTTCAATGGAAAATATAAGGAAACTCATTACAGAAGCTGATGGGTATCAACCTCATCTAATAGCTCCAGAACAAGGATACCGTCGTCTCATTGAATCTACTCTAATTACTATAAGGGGCCCGGCTGAGGCAGCTGTTGATGCGGTATGA 1290 0.4302 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIEEGSREYAEFLHLPRKRFTDFVAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVLDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGDRTIGVLTKIDLMDKGTDAVDILEGRAYRLKFPWIGVVNRSQADINKNVDMIAARRREREYFNSTPEYKHLAHRMGSEHLAKMLSKHLETVIKSKIPGIQSLINKTIAELEAELTRLGKPVAADAGGKLYSIMEICRSFDQIFKDHLDGVRPGGDKIYNVFDNQLPAALKRLQFDKQLSMENIRKLITEADGYQPHLIAPEQGYRRLIESTLITIRGPAEAAVDAV. 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06599 429 Pfam Dynamin central region 221 429 IPR000375 -
Seca12g06599 429 CDD DLP_1 33 300 IPR001401 GO:0003924|GO:0005525
Seca12g06599 429 PRINTS Dynamin signature 201 217 IPR022812 -
Seca12g06599 429 PRINTS Dynamin signature 224 243 IPR022812 -
Seca12g06599 429 PRINTS Dynamin signature 59 76 IPR022812 -
Seca12g06599 429 PRINTS Dynamin signature 34 52 IPR022812 -
Seca12g06599 429 PRINTS Dynamin signature 132 149 IPR022812 -
Seca12g06599 429 PRINTS Dynamin signature 182 200 IPR022812 -
Seca12g06599 429 Gene3D Dynamin, middle domain 326 429 - -
Seca12g06599 429 Gene3D - 1 309 IPR027417 -
Seca12g06599 429 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 60 69 IPR019762 -
Seca12g06599 429 SMART dynamin_3 1 251 IPR001401 GO:0003924|GO:0005525
Seca12g06599 429 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 31 300 IPR030381 GO:0005525
Seca12g06599 429 PANTHER DYNAMIN 2 429 IPR022812 -
Seca12g06599 429 Pfam Dynamin family 37 213 IPR045063 -
Seca12g06599 429 FunFam dynamin-related protein 1E 1 309 - -
Seca12g06599 429 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 308 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06599 Seca-Chr12 158088781 158095220 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06599 - - gmx:547855 821.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06599 12 158088781 158095220 Seca12g06599 12 158088781 158095220 ECH
Seca12g06599 12 158088781 158095220 Seca12g06599 12 158088781 158095220 PCT