Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06598 ATGCCAACCCAAACCGTTCTCGTCACCGGTGGAGCCGGTTACATCGGCAGCCACACCGTCCTTCAGCTTTTGCTCGGCGGTTACAAAACCGTCGTCGTAGATAACCTCGACAATTCTTCCGAAATCGCTCTCCACAGAGTCAAGGAACTCGCCAGAGAATTCGCCAACAACCTTTCCTTTCACAAGTTAGACATCCGGGACAGAAATGCACTGGAGAAGGTTTTTTCTTCCACAAAGTTTGATGCTGTCATACATTTTGCTGGACTGAAAGCAGTAGGTGAAAGTGTGCAGAAACCACTACTCTACTTTGACAACAACTTGATTGGGTCAATCACTCTATTTGAAGTCATGGCTGCTCATGGATGCAAGAAGCTTGTGTTCTCATCTTCAGCCACTGTATATGGTTGGCCAAAGGAGGTTCCATGTACTGAAGAGTTCCCTTTGTCAGCAGCAAACCCATATGGAAGAACTAAGTGTTGGTCTTGGAATCTAGCAACGATATCTGATGAAAGGTTTGTCTTTCAGCTTATCATCGAAGAAATGTGTCGTGATATCTACCATGCAGAACCAGAATGGAAAATAATACTGTTGAGATACTTCAACCCAGTTGGTGCACATCCCAGTGGTCATATTGGAGAGGATCCTCGTGGAATTCCGAACAACCTCATGCCATTTGTTCAGCAAGTAGCAGTTGGCAGACGCCCTGCATTGACAGTTTTTGGAAATGATTACAAGACAATTGATGGCACTGGAGTTCGTGATTACATTCATGTTGTTGATTTAGCAGATGGGCACATTGCTGCATTGCGTAAACTAGATGATCCAAAAATAGGTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTTAAAGCTTTTGAAAAGGCCTCTGGAAAGAAAATTCCACTAGTAATGTCTGGCCGGAGACCTGGGGATGCTGAAATTGTTTATGCATCAACAGCCAAAGCAGAAAGAGAACTTAACTGGAAGGCTAAATATGACATCGATGATATGTGCCGGGATCAATGGAATTGGGCTAGCAAAAACCCCTATGGCTATGGCGAATCAGAAGATTCCTCCAAATGA 1104 0.4411 MPTQTVLVTGGAGYIGSHTVLQLLLGGYKTVVVDNLDNSSEIALHRVKELAREFANNLSFHKLDIRDRNALEKVFSSTKFDAVIHFAGLKAVGESVQKPLLYFDNNLIGSITLFEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSAANPYGRTKCWSWNLATISDERFVFQLIIEEMCRDIYHAEPEWKIILLRYFNPVGAHPSGHIGEDPRGIPNNLMPFVQQVAVGRRPALTVFGNDYKTIDGTGVRDYIHVVDLADGHIAALRKLDDPKIGCEVYNLGTGKGTSVLEMVKAFEKASGKKIPLVMSGRRPGDAEIVYASTAKAERELNWKAKYDIDDMCRDQWNWASKNPYGYGESEDSSK. 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06598 367 NCBIfam UDP-glucose 4-epimerase GalE 6 357 IPR005886 GO:0003978|GO:0006012
Seca12g06598 367 FunFam UDP-glucose 4-epimerase 4 295 362 - -
Seca12g06598 367 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 358 IPR036291 -
Seca12g06598 367 Gene3D - 211 352 - -
Seca12g06598 367 Pfam GDP-mannose 4,6 dehydratase 7 347 IPR016040 -
Seca12g06598 367 CDD UDP_G4E_1_SDR_e 5 351 IPR005886 GO:0003978|GO:0006012
Seca12g06598 367 Gene3D - 6 292 - -
Seca12g06598 367 PANTHER UDP-GLUCOSE 4-EPIMERASE 2 363 - -
Seca12g06598 367 PRINTS Nucleotide sugar epimerase signature 253 268 - -
Seca12g06598 367 PRINTS Nucleotide sugar epimerase signature 318 335 - -
Seca12g06598 367 PRINTS Nucleotide sugar epimerase signature 32 48 - -
Seca12g06598 367 PRINTS Nucleotide sugar epimerase signature 279 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06598 Seca-Chr12 158079837 158084437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06598 5 351 Miscellaneous Gene Families AT4G00110 25.278 3.30e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06598 K01784 - gmx:100812565 628.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06598 12 158079837 158084437 Seca12g06598 12 158079837 158084437 ECH
Seca12g06598 12 158079837 158084437 Seca12g06598 12 158079837 158084437 PCT