Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06591 ATGAGGGTGAGGACTTGGATTTATCACGTAGAGCATTACAATGAGCATTTGAGCTTTTTCTTCATACTATTTAGGATAAATCATCCTTCACACTTATCATTACTTCCACCATCAAATATAGGCTTGTTCTTCCTTCCCGAAGAGGGTCAATTTGATTTCATGGATGATGGTCCTGCGAAATTAAAGATCATCCCTGATCATTTTCAAGTTCCAACATCAAGTGCAGAATCTCCTGAGAGCAGAACATCATCCATTACAGAACCTGGAACTGATCAATCTTCGACTTCTAGACACCATCTATGGACTCGAAGAAAATTTAGGACAACTTCTATGTTGAAGTTGTTTACCCTACCGAGGCTGCCATGGGGGTCCGATACTGGAGGTCAGGAAAAGGTTGAGCTAACAGCTGCACAAGTAGAGTCACTTCGACAGGAGATTGCTGATATAGACGAGAGGGAAGCTCACTTGAAAGCTCGGTTGGAACATGTTGATGAAGTTTTGCGGTCAGCTTGTCTATCTGGCTATTTATACATTCGAACTAGATGGGCAGCACTGCCAGGAGAACCACCACCTATTGATGATACTGAAGTAGATGATTGGCTTCCTCGATTTGTCGTTCTACATGGAGCATGTATATTCTTATATTTGTTGTGTACAGATATAAGCCCTCAGGACTCAACCCTTCTATCTGATATTATTGAAGTAGGGAGATTGCCAAGTTTTAAGCGTGAAGATGATCTTCAATATGCCTTTTATATTTTAACTCGTCATGGGTTACGCTATGAGTGCTCAAGCAATTCTATGATACAGGTGGACTCTTGGTTATTAGCTTTAAAAAATTACTGCAAACTGGAATCTGATACGTCAGTTCCTAATGGTTCATTTGAGAAATCTGCTTCCAGAGCCGCGAGGTCCCTTCTCTCTGCTTCTAAGGCCTCTTCCTTTCACTCTCAAGGACGCGCTGTAGCGTCTGCTGCAGCTGTTTCATTCACCAGAAAAGTGCCTTTTTATGCTTCAAATTATGGGAGGAACGGCTCTGGAACTGGATCCGCAACATGGGTTGCAGGAGCTCTCGCTCTTCCTGCTGCAGCTTTCCTGCTCCAAGATCAGGAAGTGCATGCTGCTGAGCTGGAGCGCACTTTCATTGCCATTAAGCCTGATGGAGTGCAGAGAGGACTGATTTCAGAGATTATATCTCGTTTTGAGAGGAAAGGGTACAAGCTTGTTGGAATTAAAGTATTGATTCCTTCAAAGGAATTTGCACAAAAGCATTATCACGATCTGAAAGAGAGACCCTTCTTCAATGGGCTGTGTGAATTCCTAAGCTCTGGCCCTGTTATTGCAATGGTGTGGGAAGGACAGGGAGTTATTTCCTATGGCCGAAAACTAATTGGAGCCACAGATCCACAGAAATCAGAACCTGGAACTATTAGGGGTGATCTGGCTGTTGTTGTTGGAAGAAATATCATTCATGGAAGTGATGGTCCAGAGACTGCAAAGGATGAGATAAAGTTGTGGTTTAAGCCAGAGGAGTTGGTTAGTTACACAAGCAATGCAGAGAAGTGGATTTATGGTGTCAACTGA 1584 0.4306 MRVRTWIYHVEHYNEHLSFFFILFRINHPSHLSLLPPSNIGLFFLPEEGQFDFMDDGPAKLKIIPDHFQVPTSSAESPESRTSSITEPGTDQSSTSRHHLWTRRKFRTTSMLKLFTLPRLPWGSDTGGQEKVELTAAQVESLRQEIADIDEREAHLKARLEHVDEVLRSACLSGYLYIRTRWAALPGEPPPIDDTEVDDWLPRFVVLHGACIFLYLLCTDISPQDSTLLSDIIEVGRLPSFKREDDLQYAFYILTRHGLRYECSSNSMIQVDSWLLALKNYCKLESDTSVPNGSFEKSASRAARSLLSASKASSFHSQGRAVASAAAVSFTRKVPFYASNYGRNGSGTGSATWVAGALALPAAAFLLQDQEVHAAELERTFIAIKPDGVQRGLISEIISRFERKGYKLVGIKVLIPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGQGVISYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELVSYTSNAEKWIYGVN. 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06591 527 SMART ndk_5 377 514 IPR034907 -
Seca12g06591 527 SUPERFAMILY PH domain-like 170 289 - -
Seca12g06591 527 Gene3D - 168 290 IPR011993 -
Seca12g06591 527 Coils Coil 132 159 - -
Seca12g06591 527 Pfam Nucleoside diphosphate kinase 378 511 IPR034907 -
Seca12g06591 527 CDD NDPk_I 378 507 - -
Seca12g06591 527 Hamap Nucleoside diphosphate kinase [ndk]. 377 512 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Seca12g06591 527 MobiDBLite consensus disorder prediction 70 96 - -
Seca12g06591 527 PRINTS Nucleoside diphosphate kinase signature 488 507 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Seca12g06591 527 PRINTS Nucleoside diphosphate kinase signature 424 443 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Seca12g06591 527 PRINTS Nucleoside diphosphate kinase signature 444 461 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Seca12g06591 527 PRINTS Nucleoside diphosphate kinase signature 380 402 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Seca12g06591 527 PRINTS Nucleoside diphosphate kinase signature 465 481 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Seca12g06591 527 PANTHER OS05G0595500 PROTEIN 50 508 - -
Seca12g06591 527 MobiDBLite consensus disorder prediction 70 98 - -
Seca12g06591 527 ProSitePatterns Nucleoside diphosphate kinases active site. 488 496 IPR023005 -
Seca12g06591 527 SUPERFAMILY Nucleoside diphosphate kinase, NDK 377 524 IPR036850 -
Seca12g06591 527 FunFam Nucleoside diphosphate kinase 373 525 - -
Seca12g06591 527 Gene3D - 368 525 IPR036850 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06591 Seca-Chr12 158016008 158026722 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06591 - K00940 aprc:113853674 772.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06591 12 158016008 158026722 Seca12g06591 12 158016008 158026722 ECH
Seca12g06591 12 158016008 158026722 Seca12g06591 12 158016008 158026722 PCT