Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06590 ATGGCGGAAGAAAGATTCATCGTTGAGGTTGAGAAAGCCAAACAAGCCACAGAAGGGAAGCCATCTATGGGTCCTGTCTACCGTAGCCGTTTCTCTAAGGATCCATCTCCTCCTCCTATTGATGGCCTTAATACCTGCTGGGATGTTTTCAGGATGTCTGTTGAGAAGTATCCATCAAAGCCAATGCTTGGACGCCGGGAAATTGTGAATGGGAATGCTGGAAAGTACAAGTGGCAAACTTACAAAGAAGTGTATGACTTGGTTCTGAAAGTTGGAAACTCCATTCGTGCTTGTGGTTATGGGGAAGGAGCAAAGTGTGGTATTTATGGTGCCAATTGCGCAGAATGGATTATGAGCATGGAGGCCTGCAATGCTCATGGACTTTACTGTGTTCCTTTATATGATACCTTAGGTGCTGGTGCCGTGGAATTTATCATATGCCATTCAGAGGTTTCAATTGCATTTGTCGAAGAAAAGAAGATACCTGAGCTATTGAAGACATTTCCAAATGCAACAAAGTATCTAAAGACACTTGTGAGCTTTGGAAAGGTTCTTCCTGAACAAAAGCAAGAAATTGAAAAGTTTGGGTTGACAATATATGCATGGCATGAATTTTTGCAAGTGGGTAATAATCAGAGTTTTGATCTTCCTGTGAAAAAGAAAACTGACATTTGTACAATAATGTATACAAGTGGAACTACTGGAGACCCCAAAGGTGTGTTGATATCCAATGAGAGCATTATTACAATCTTAGCTGCGGTTACCAAAGTGCTTGGGTGTTGCAATGAACAATTGAATGAGCATGATGTATACCTATCATACCTTCCTCTTGCACACATCTTTGACAGGATCATTGAGGAGGCAATGATATGGCATGGTGCTTCAATAGGTTTCTGGCGTGGGGTCAGTATATGTTGGTTGCAGGATGTCAAATTGTTAATGGAAGATATTGGGGAGCTAAAACCAACTATTTTTGTTGCTGTTCCCCGTGTGCTTGATAGGGTGTACTCAGGTTTGACACAGAAGGTTTCTACAGGGGGCTTTGTAAAACAGACAATGTTCAATTTTGCCTACTCATACAAGTTGCATAACATGAGCAAAGGACAAAGGCATGAAACGGCATCTCCATTATTTGACAAAATGGTGTTTAATAAGGTAAAACAAGGTTTAGGGGGTAAAGTACGTATTATTTTATCTGGAGCAGCGCCTCTATCTAGACATGTGGAAGGTTACATGAGAGTGGTCACTTGTGCTCATATCCTACAAGGCTATGGCCTGACTGAAACTTGTGCTGGAACCTTTGTCTCATTACCAAATGAAATGAATATGCTTGGTACAGTGGGCCCTCCTGTACCATATGTGGATGTGTGCTTGGAATCTATTCCTGAAATGGGATATGATGCCCTTGCAAGCACACCTAGAGGTGAAATCTGTGTAAGGGGAAGTACTGTGTTTTCAGGGTACCACAAACGTGAAGACCTTACTAAAGAGGTTATGGTTGATGGATGGTTCCATACTGGGGATATTGGAGAGTGGCAACCTAATGGAACAATGAAAATTATTGATCGGAAGAAGAATATATTTAAGCTTTCACAAGGAGAATATGTTGCTGTTGAAAATCTGGAGAATATTTATGTTCAAACTCCAATTATTGAATCTATATGGATCTACGGAAACAGTTATGAGTCATATCTTGTTGCTGTTGTTAACCCTCGCCAGCAAGCACTTGAACATTGGGCAGAAGAAAATGCTATAACCAAGGACTTCAATTCTCTCTGTGAAGATTCAAGGGCAAAAAGTTACATACTTGGAGAGCTTGCAAAGACTGGGAAGGAAAAGAAGTTGAAAGGTTTTGAATTTATAAAAGATGTTCATCTTGATCCAGTTCCATTCGATATGGAACGTGACCTTATCACTCCAACATATAAGAAGAAGAGACCCCAGTTGCTTAAATACTACCAGAAAGACGTTGACAACATGTACAAGAAACAAAATAAATCCAATGCCTGA 2010 0.405 MAEERFIVEVEKAKQATEGKPSMGPVYRSRFSKDPSPPPIDGLNTCWDVFRMSVEKYPSKPMLGRREIVNGNAGKYKWQTYKEVYDLVLKVGNSIRACGYGEGAKCGIYGANCAEWIMSMEACNAHGLYCVPLYDTLGAGAVEFIICHSEVSIAFVEEKKIPELLKTFPNATKYLKTLVSFGKVLPEQKQEIEKFGLTIYAWHEFLQVGNNQSFDLPVKKKTDICTIMYTSGTTGDPKGVLISNESIITILAAVTKVLGCCNEQLNEHDVYLSYLPLAHIFDRIIEEAMIWHGASIGFWRGVSICWLQDVKLLMEDIGELKPTIFVAVPRVLDRVYSGLTQKVSTGGFVKQTMFNFAYSYKLHNMSKGQRHETASPLFDKMVFNKVKQGLGGKVRIILSGAAPLSRHVEGYMRVVTCAHILQGYGLTETCAGTFVSLPNEMNMLGTVGPPVPYVDVCLESIPEMGYDALASTPRGEICVRGSTVFSGYHKREDLTKEVMVDGWFHTGDIGEWQPNGTMKIIDRKKNIFKLSQGEYVAVENLENIYVQTPIIESIWIYGNSYESYLVAVVNPRQQALEHWAEENAITKDFNSLCEDSRAKSYILGELAKTGKEKKLKGFEFIKDVHLDPVPFDMERDLITPTYKKKRPQLLKYYQKDVDNMYKKQNKSNA. 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06590 669 CDD LC-FACS_euk 74 662 IPR045311 GO:0004467|GO:0006631
Seca12g06590 669 SUPERFAMILY Acetyl-CoA synthetase-like 41 662 - -
Seca12g06590 669 Gene3D - 43 523 IPR042099 -
Seca12g06590 669 ProSitePatterns Putative AMP-binding domain signature. 227 238 IPR020845 -
Seca12g06590 669 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 16 661 - -
Seca12g06590 669 Pfam AMP-binding enzyme 52 531 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06590 Seca-Chr12 158005672 158013124 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06590 2 669 Acyl Lipid Metabolism Gene Families AT4G11030 70.659 0.0 1022
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06590 K01897 - gmx:100811306 1166.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06590 12 158005672 158013124 Seca12g06590 12 158005672 158013124 ECH
Seca12g06590 12 158005672 158013124 Seca12g06590 12 158005672 158013124 PCT