Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06589 ATGATGAAGAGCGAAAGCGAATTGGTTGGGCTTTGCATTGAAGCGGCGTGTGAGAGCAGAGAAAGCGTGGAGAAATGGCGGAGGCAGAAACGCACTCTCGATCGCTTGCCTTCTCCTCTCGCCGATGCTCTCCTCCGCCGCCTCATCACCCGCCGCCTCCTCCACGCCTCCCTCCTCGAGGTTTTCAAATATAGTGCCGAAGAGGTTGATTTGAGAGGAGACAACTCTGTGGATGCGGAGTGGATGGCATATTTGGGAGCATTTCGCCACTTGCGCTACTTGAACGTTGCCGATTGTCATCGAATCACCACTTCAGCTCTTTGGCCTATCACAGGAATGACAAGCCTTAAAGAATTGGATCTCTCTAGATGCTTCAAGTTTAATGATGCTGGAATTAATCATATTCTTTCGATTCCTAATTTGGAGAAATTACACATTTCGGAAACTAGCGTGACTGCCAAAGGAGTCAAGCTTCTCGCCTCTCTTGAAAACTTGTCTCATCTTGACTTGGGCGGTTTGCCCGTAGATGATATATCATTAACTTCATTACAGGTACTTAAAAAGCTACAATATATTGATCTCTGGGGTAGTAAAATATCAAATGAAGGTGCTGCTGTTCTCAAGATGTTCCCGAAGTTAACTAATGTAAATCTTGCTTGGACAAGTGTCACAAAATTGCCTAATTTATCATCTCTTGAATGCCTAAACATGAGCAATTGTACTATTGACTCTATACTTGAAGATGATAAAGCTCCTTTGTCAAAGCTTATTCTCTCTGGGGCTAAATTCGTGAATGAAGGTGAAGCCTTATTATTTGTGAACACAAATTTCCTGTCCTTTCTGGATGTAGGCCATTCTGGACTTCACAAATTCTTCTTCTTAAGTAAAATGAAAGTAATAGAACATCTCGATCTCAGCTCATGCATGATGGGGGATGATTCAGTTGAGATGATTGCATGCGTTGGTGGAAACTTGAAAAGTCTGAATCTGAGCGGTACTAGGGTTAGCTCTGCTGGATTAGGGATTTTAGCTGGACATGTTCCCAATCTTGAAATTCTGTCACTATCTCAGACACCTGTGGATGATACTGCCATCTCATATATCAGCATGATGCCTTCATTAAAAGTTGTTGACCTGAGCAACACAAACATTAAAGGTATTTGGTAA 1167 0.4267 MMKSESELVGLCIEAACESRESVEKWRRQKRTLDRLPSPLADALLRRLITRRLLHASLLEVFKYSAEEVDLRGDNSVDAEWMAYLGAFRHLRYLNVADCHRITTSALWPITGMTSLKELDLSRCFKFNDAGINHILSIPNLEKLHISETSVTAKGVKLLASLENLSHLDLGGLPVDDISLTSLQVLKKLQYIDLWGSKISNEGAAVLKMFPKLTNVNLAWTSVTKLPNLSSLECLNMSNCTIDSILEDDKAPLSKLILSGAKFVNEGEALLFVNTNFLSFLDVGHSGLHKFFFLSKMKVIEHLDLSSCMMGDDSVEMIACVGGNLKSLNLSGTRVSSAGLGILAGHVPNLEILSLSQTPVDDTAISYISMMPSLKVVDLSNTNIKGIW. 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06589 388 PANTHER - 299 384 - -
Seca12g06589 388 Gene3D Ribonuclease Inhibitor 152 254 IPR032675 -
Seca12g06589 388 Gene3D Ribonuclease Inhibitor 12 151 IPR032675 -
Seca12g06589 388 SUPERFAMILY RNI-like 69 385 - -
Seca12g06589 388 Gene3D Ribonuclease Inhibitor 255 386 IPR032675 -
Seca12g06589 388 Pfam Leucine Rich repeat 300 319 IPR001611 GO:0005515
Seca12g06589 388 SMART LRR_CC_2 114 138 IPR006553 -
Seca12g06589 388 SMART LRR_CC_2 88 113 IPR006553 -
Seca12g06589 388 SMART LRR_CC_2 162 186 IPR006553 -
Seca12g06589 388 SMART LRR_CC_2 322 346 IPR006553 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06589 Seca-Chr12 157999440 158003764 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06589 - - gmx:100814174 647.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06589 12 157999440 158003764 Seca12g06589 12 157999440 158003764 ECH