Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06568 ATGGATGATGAATTCGTTGATGAAGCAACCAGACTGGAGGTTGCTGAGGGTTTGCAATTGCAACATCAAAGCAAAGATGAGGAGTATTCACTAAACCCTGAAACCCGTAGAATATTAAAACCCCAAGATATACATAATGACTACTCCCAGATCCCACCTCGACGATATGATGGCATTCCACTAGGGAAGAATATTGTTGAAGCCCCCACCAGCCATGTTGCTGCGCCAGAACATCTTCATCCGAGTCTGTTCTTGGATGATGCTGGTAACATGGTTGAAGAATTAACAGTGAAGAGTTACAATGGATCAAGCTTGGATATTGGTACGTCAAGCAACCGGGAGCTTGTGTATAATAGCCAGAGTCAATGGCCACATCTTTATCAGCGAGCTAGTGATTCAGGAGTGGGAAATTCAGTAAGTGATACTGGGTACAGAAGTAGTGGGCAAGCTACATCTAGTGTTTGGGAGGATATTGGGTCCATATCTTTCCCACATATGTTAGGTAGAAAATCACTCAGTGATGATCAGAGCAATGTCATGAAACACTTCACAACTGTTGAACATAAAGAGGATGTGGGTGATGCTCGTGAAGGAATACGAACGAAAATTATATCCAAATCAGGATTTGCAGAGTATTTTATTAAGAATACATTGAAGGGAAAGGGTATTGTATGTAAAGGTCCACCTTCTACTGGCTTATGTGTTGAGTCTAGAGACCAGATTCCGATAAAGGCTGGTATGGGCACCCGGATGGATTCTAATGTATCACTGAGCTCGGGTTCTAAAACTGCAAAGTTTCCTCATAATGTTACAGTGCCACGATCTGGTGGGTCTGACTGTGATGGTGTGACTTTGAGAGAATGGTTGAAAGCTGGGCACCAGAAAGTAAGCAAAACAGAGCACTTGAGTATATTTAGAAAGATTGTGGATTTGGTGGATGGCTTTCACTCTCAGGGAGCTGCACTGCACAATCTGTGCCCATCTTATATTAAGTTGTTACCATCAAACCAGGTTATGTACCTTGGGTTGCCTACTCAGAAACAGACGTTAGAATCTAGTGTTGCAAATTCTGAAGTTCTTCAGTTGGAGAATTCTGTAATTAGAAAAAGGCTGTCAGAGCAGGTAATATCACCCTCTCTTGATGTGTGGTCGAAGAAGCAGAAACTTAATGAGAATGTAAGAGTTGCTGGTGATTGGAATCAGCGCCCTCCAAGGCCTGACTTTTATCTTCAAATTGCTAATGATATTAAAGTCAACGCAGTGGGATCACAAGATTATTGCAATGAATATTCGGAAGATATTCGATTTTCTAAACATAATAATTGGAGAAAATCTAGCTTCCCTCACATGTCTAACGCCAGTCCATTGCAATTGATATCTTTAAATGAAAGACTGGAAGATCGGTGGTATGCAAGTCCCGAGGGAGGTTGCACGGTATCATCAAATATCTACTGTTTGGGAGTCCTCTTTTTTGAGTTACTTAGTCATTTTGATTCAGAAAGGGCGCATATTGTAGCAATGTCTGATCTTCATCGTAGGATTCTTCCTCCAGTTTTCCTATCAGAAAATCTTAAGGAAGCCGGATTTTGTCTTCTTCTGCTTCATCCTGAACCATCATCACGTCCAACAACAAGGGAGATCCTACAATCTGAAGTGATTAATGGAATGCAGGAGGTCCATAGTGAGGAATTACAATCAAGTCTTGACCAAGATGATGCAGAATCAGAATTGTTATTGCATTTCCTCATCTCACTAGAAGAGCAGAAGCACAAGGATGCACACAAATTGGTAGAAGAAATCAGATGCTTGGAATCAGATATAGAGGAGGTGGAGAGGAGGCATAACTTGAGAAAATCTTTGGTTCCCTCTAACTTGCAGAATGGATCCTCTTGTCAAAAGGATATTGTGTCTCTTAATGAAAAACCTTCAAGTTCAGAAACATTACCGCCAACGTCCACAATTTCTAATGCAAATGAACTGAGATTGACAAAAAATATATGCCAGCTTGAAAGTGCTTACATTTCCATGAGATCCAAAATTAAGCTTCCTGAAACAGTTCCTGCAACTCATCCAGATAAAGATATACTAAAAAATCGTGAGAACTGGTGTATGGCCCAAAAAGACACAGAACAACATAAAACGACAGATACTTTAGGAGCTTTCTTTGATGGTTTGTGCAAGTATGCACGTTATAGCAAGTTTGAAGTGCGTGGGGTACTAAGAAATGCAGATTTTAACAATCCTGCAAATGTAATCTGCTCTCTGAGTTTTGATAGAGATGAAGACTACTTTGCTGCTGCTGGGATATCAAAGAAAATAAAAATTTTTGAGTTTAATGCACTTCTGAATGACTCTGTTGATATCCATTATCCTGTAATTGAGATGTCAAACAGATCAAAGCTCAGTTGTGTTTGCTGGAATAACTACATCAAGAACTATCTTGCCTCCACAGACTATGATGGTGTAGTTAAGCTTTGGGATGCTAATACAGGTCAAGGGTTTTCTCAATTTACCGAACATGAAAAGAGGGCTTGGTCTGTTGATTTTTCTCCGATATGCCCTACAAAATTTGCCAGTGGGAGTGATGATTGTTCTGTGAAGCTGTGGAGTATCAGTGAGAGAAACAGCTTAGGCACAATCAGGAATGTTGCTAATGTCTGCTGTGTTCATTTCTCTGCTCATTCCTCTCATCTGCTGGCCTTTGGATCTGCGGATTATTCAACCTATTGCTATGATCTTCGCAATCTTAGAAGCCCCTGGTGTGTGTTGGCTGGCCATCGAAAAGCTGTAAGCTATGTCAAATTCTTGGACTCTGAAACACTTGTTTCTGCATCAACTGATAATACATTAAAGATCTGGGATCTCAATAAAACCTCGCCTGTGGGTCCATCAACTAGTGCTTGCAGCTTAACCCTGTCAGGACATACTAATGAGAAGAATTTTGTGGGTTTATCAGCCTCTGATGGATATATTGCATGTGGTTCAGAAACAAATGAGGTTTATGCCTACTATAGATCTCTTCCTATGCCTGTCACTTCGCACAAGTTTGGGTCCATTGATCCCATTTCTGGTAAAGAGACCGATGATGACAATGGTCAGTTTGTTTCAAGTGTGTGCTGGAGAGGGAAATCAGACATGGTTATTGCGGCCAATTCAAGTGGTTGTATAAAAGTTTTACAGATGGTTTGA 3189 0.407 MDDEFVDEATRLEVAEGLQLQHQSKDEEYSLNPETRRILKPQDIHNDYSQIPPRRYDGIPLGKNIVEAPTSHVAAPEHLHPSLFLDDAGNMVEELTVKSYNGSSLDIGTSSNRELVYNSQSQWPHLYQRASDSGVGNSVSDTGYRSSGQATSSVWEDIGSISFPHMLGRKSLSDDQSNVMKHFTTVEHKEDVGDAREGIRTKIISKSGFAEYFIKNTLKGKGIVCKGPPSTGLCVESRDQIPIKAGMGTRMDSNVSLSSGSKTAKFPHNVTVPRSGGSDCDGVTLREWLKAGHQKVSKTEHLSIFRKIVDLVDGFHSQGAALHNLCPSYIKLLPSNQVMYLGLPTQKQTLESSVANSEVLQLENSVIRKRLSEQVISPSLDVWSKKQKLNENVRVAGDWNQRPPRPDFYLQIANDIKVNAVGSQDYCNEYSEDIRFSKHNNWRKSSFPHMSNASPLQLISLNERLEDRWYASPEGGCTVSSNIYCLGVLFFELLSHFDSERAHIVAMSDLHRRILPPVFLSENLKEAGFCLLLLHPEPSSRPTTREILQSEVINGMQEVHSEELQSSLDQDDAESELLLHFLISLEEQKHKDAHKLVEEIRCLESDIEEVERRHNLRKSLVPSNLQNGSSCQKDIVSLNEKPSSSETLPPTSTISNANELRLTKNICQLESAYISMRSKIKLPETVPATHPDKDILKNRENWCMAQKDTEQHKTTDTLGAFFDGLCKYARYSKFEVRGVLRNADFNNPANVICSLSFDRDEDYFAAAGISKKIKIFEFNALLNDSVDIHYPVIEMSNRSKLSCVCWNNYIKNYLASTDYDGVVKLWDANTGQGFSQFTEHEKRAWSVDFSPICPTKFASGSDDCSVKLWSISERNSLGTIRNVANVCCVHFSAHSSHLLAFGSADYSTYCYDLRNLRSPWCVLAGHRKAVSYVKFLDSETLVSASTDNTLKIWDLNKTSPVGPSTSACSLTLSGHTNEKNFVGLSASDGYIACGSETNEVYAYYRSLPMPVTSHKFGSIDPISGKETDDDNGQFVSSVCWRGKSDMVIAANSSGCIKVLQMV. 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06568 1062 Gene3D - 721 1062 IPR015943 GO:0005515
Seca12g06568 1062 PRINTS G protein beta WD-40 repeat signature 857 871 IPR020472 -
Seca12g06568 1062 PRINTS G protein beta WD-40 repeat signature 814 828 IPR020472 -
Seca12g06568 1062 PRINTS G protein beta WD-40 repeat signature 941 955 IPR020472 -
Seca12g06568 1062 ProSitePatterns Trp-Asp (WD) repeats signature. 941 955 IPR019775 -
Seca12g06568 1062 ProSiteProfiles Trp-Asp (WD) repeats profile. 794 836 IPR001680 GO:0005515
Seca12g06568 1062 Pfam WD domain, G-beta repeat 922 954 IPR001680 GO:0005515
Seca12g06568 1062 Pfam WD domain, G-beta repeat 835 870 IPR001680 GO:0005515
Seca12g06568 1062 ProSitePatterns Trp-Asp (WD) repeats signature. 814 828 IPR019775 -
Seca12g06568 1062 SUPERFAMILY Protein kinase-like (PK-like) 280 560 IPR011009 -
Seca12g06568 1062 Coils Coil 593 613 - -
Seca12g06568 1062 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 837 872 - -
Seca12g06568 1062 ProSiteProfiles Trp-Asp (WD) repeats profile. 923 963 IPR001680 GO:0005515
Seca12g06568 1062 Gene3D Transferase(Phosphotransferase) domain 1 280 566 - -
Seca12g06568 1062 ProSiteProfiles Trp-Asp (WD) repeats profile. 837 879 IPR001680 GO:0005515
Seca12g06568 1062 PANTHER PROTEIN SPA1-RELATED 2 55 1062 IPR044630 GO:0009640
Seca12g06568 1062 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 923 956 - -
Seca12g06568 1062 SMART WD40_4 733 777 IPR001680 GO:0005515
Seca12g06568 1062 SMART WD40_4 873 912 IPR001680 GO:0005515
Seca12g06568 1062 SMART WD40_4 1021 1060 IPR001680 GO:0005515
Seca12g06568 1062 SMART WD40_4 788 827 IPR001680 GO:0005515
Seca12g06568 1062 SMART WD40_4 965 1004 IPR001680 GO:0005515
Seca12g06568 1062 SMART WD40_4 830 870 IPR001680 GO:0005515
Seca12g06568 1062 SMART WD40_4 916 954 IPR001680 GO:0005515
Seca12g06568 1062 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 720 1062 - -
Seca12g06568 1062 SUPERFAMILY WD40 repeat-like 745 1060 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06568 Seca-Chr12 157792355 157802783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06568 811 962 Miscellaneous Gene Families AT5G08390 25.309 1.39e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06568 K16240 - gmx:100776980 1585.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06568 12 157792355 157802783 Seca12g06568 12 157792355 157802783 ECH
Seca12g06568 12 157792355 157802783 Seca12g06568 12 157792355 157802783 PCT