Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06543 ATGAATGGTAATCCGAAACACGAGCGCCGATGGGCGTCCGACACCGTTCCCGGAAAAGCAACCATCAGCGCCGGAACTTCACCGGGAACAGAGTCCAATTCCGCCGCTGACGAGTTTGTGGAGGTAACTCTTGATCTTCGAGACGATGACACCATCGTTCTTCGTAGTGTTGAGCCAGCCTCTGTTATTAACATCGACGACGGCGTCGCCGGTAGCGGATGCGAAACTCCAGCGTCTGTTTCGAGGTCGCCGACGATCCGGAGGAGCTCGTCCAGAGGCTTGCGGCAGTTCTCGCAGGAGCTGAAAGCCGAGGCGGTTGCCAAGGCCAGGCAGTTCTCGCAGGAGTTTAAGGCAGAGCTGCGGCGATTCTCGTGGAGCCACGGCGGAGTTGAAACGGCGCTGGCTGCTCGAGCTCTCCGGAAACAACGCGCTCAGCTTGATCGCACTCGGTCTGGTGCTCATAAAGCACTGCGCGGTCTGAAATTCATCAGCAGTAAATCCAATGGCGTTGATACGTGGAACGAGGTGCAGAGCAACTTTGATAGGCTTTCCAAGGACGGATTTCTCTATCGCGCTGATTTCGGTCAATGCATAGGGATGAAGGATTCCAAGGAATTCGCTCTGGAACTGTTTGATGCTCTGGGTCGTAAACGAAGATTGACAGTTGACAAGATCAGCAGGGATGAACTTTACGAATTCTGGTCGCAAATTACCGATCAAAGTTTTGACTCACGGCTCCAGATCTTCTTCGACATGGTGGACAAGAACGAAGATGGAAGAATCACCGAAGAAGAAGTGAAAGAGATCATCATGTTAAGTGCTTCTGCAAATAAGTTATCCAGATTGAAGGAGCAGGCCGAAGAGTATGCAGCTTTGATCATGGAAGAGTTAGACCCCGAAAGACTTGGCTACATCGAGCTATGGCAATTGGAGACGCTTCTTTTACAAAAGGACACGTATCTCAACTACAGTCAAGCTCTAAGCTACACAAGCCAAGCTTTGAGCCAGAACCTACAAGGGCTAAGGAAGAAAAGTCCTATACGTAGAATGAGCCGCAGAGTACTCTACTACTTGCAAGAGAATTGGAGGAGACTTTGGCTTTTAACATTGTGGGTTTGCATAATGATTGGGCTGTTCACGTGGAAGTTCATTCAGTACAAGCAAAAAGATGCTTTTCAGATCATGGGTTACTGTCTTCTCACGGCCAAAGGTGCGGCTGAGACTCTCAAGTTCAACATGGCACTTATACTCTTGCCCGTCTGCAGAAACACCATAACTTGGCTAAGGTCTACCAAGCTGTCTTACGTTGTACCTTTTGATGACAACATCAACTTTCATAAGGCAATTGCTGGTGCCATCGTGATTGGTGTTATCCTTCATGCCGGAGATCACCTTGCTTGTGATTTCCCAAGACTTATAAGTTCGTCTGAAGCTGATTATGATAAATATTTGAAAGGTGTATTTGGCGATCATAAACCCAGCTACGGAGACTTAGTTAAAGGGGTCGAGGGTGTGACGGGAGTTTTGATAGTGGTTCTAATGGCAATAGCATTTACTCTTGCAACCAAATGGTTCAGGAGAAATCTCATTAAGCTGCCCAAACCATTTAGTAGGCTCACTGGCTTCAATGCCTTCTGGTATTCACACCATCTGTTCGTCATTGTCTATGTTCTGCTCATCATCCATGGTGTAAAACTTTACCTCGTGCACAAATGGTATTTTAAAACGACATGGATGTATCTTGCGGTTCCAGTTTTACTTTATGCGTCAGAAAGAATACTCAGATTATTTCGTTCTGGTTTATATACAGTCCATCTTATAAAGGTTGCCATATATCCTGGAAATGTTCTCACGTTGCAAATGTCCAAGCCTCCTCAATTTCGCTACAAGAGTGGACAATACATGTTTGTGCAATGTCCTGCTGTTTCTCCGTTTGAGTGGCATCCGTTTTCTATTACCTCAGCCCCTGGGGATGACTACCTGAGTGTTCACATTCGGCAACTGGGTGACTGGACACAGGAACTTAAAAGGGTATTCTCTGAAGCCTGCGAGCCCCCTGTATCTGGGAAGAGTGGGCTTCTGAGGGCTGATGAAACGACAAAGAAAAGTTTGCCGAAGTTAAAGATAGATGGACCTTACGGTGCGCCAGCACAAGATTATAGAAAATATGATGTTTTGTTGCTTGTTGGTCTCGGAATAGGAGCAACACCTTTCATCAGCATTCTAAAAGACCTTCTCAACAACATTATCAAAATGGAGGAGCTGGCGGATTCAATCTCTGATATAAGTAGAGGTTCGGACCTTAGTGTTGGGAGTACTGAGTCACCATCTCTTAATAAAATTGCTCCGAAAAGGAAGAAAGCACTGAAGACTACCAACGCTTATTTCTACTGGGTTACAAGAGAGCAGGGCTCTTTTGATTGGTTCAAAGGAGTCATGAATGAAGTAGCTGAGCTTGATCAAAGGGGTGTTATTGAGATGCACAACTACTTGACTAGCGTATACGAGGAAGGCGATGCTAGATCTGCTCTCATCACCATGGTTCAAGCACTCAATCATGCCAAAAATGGAGTTGATATTGTTTCTGGGACTAGGGTGCGAACTCATTTTGCTAGGCCTAACTGGAAGAAGGTTTTCAACAAAATGTGTTCCAAGCACTATAGTGGACGAATAGGGGTATTTTATTGTGGGGCACCAGTTTTGGCTAAAGAACTTAGCAAGCTCTGCTTCGAGTTCAATGAAAAAGGTCCAACAAAATTCGAGTTCCACAAGGAGCATTTCTAA 2784 0.4591 MNGNPKHERRWASDTVPGKATISAGTSPGTESNSAADEFVEVTLDLRDDDTIVLRSVEPASVINIDDGVAGSGCETPASVSRSPTIRRSSSRGLRQFSQELKAEAVAKARQFSQEFKAELRRFSWSHGGVETALAARALRKQRAQLDRTRSGAHKALRGLKFISSKSNGVDTWNEVQSNFDRLSKDGFLYRADFGQCIGMKDSKEFALELFDALGRKRRLTVDKISRDELYEFWSQITDQSFDSRLQIFFDMVDKNEDGRITEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPERLGYIELWQLETLLLQKDTYLNYSQALSYTSQALSQNLQGLRKKSPIRRMSRRVLYYLQENWRRLWLLTLWVCIMIGLFTWKFIQYKQKDAFQIMGYCLLTAKGAAETLKFNMALILLPVCRNTITWLRSTKLSYVVPFDDNINFHKAIAGAIVIGVILHAGDHLACDFPRLISSSEADYDKYLKGVFGDHKPSYGDLVKGVEGVTGVLIVVLMAIAFTLATKWFRRNLIKLPKPFSRLTGFNAFWYSHHLFVIVYVLLIIHGVKLYLVHKWYFKTTWMYLAVPVLLYASERILRLFRSGLYTVHLIKVAIYPGNVLTLQMSKPPQFRYKSGQYMFVQCPAVSPFEWHPFSITSAPGDDYLSVHIRQLGDWTQELKRVFSEACEPPVSGKSGLLRADETTKKSLPKLKIDGPYGAPAQDYRKYDVLLLVGLGIGATPFISILKDLLNNIIKMEELADSISDISRGSDLSVGSTESPSLNKIAPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVFNKMCSKHYSGRIGVFYCGAPVLAKELSKLCFEFNEKGPTKFEFHKEHF. 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06543 927 MobiDBLite consensus disorder prediction 76 94 - -
Seca12g06543 927 FunFam Respiratory burst oxidase protein A 714 927 - -
Seca12g06543 927 FunFam Respiratory burst oxidase homolog A 590 682 - -
Seca12g06543 927 CDD EFh 205 271 IPR002048 GO:0005509
Seca12g06543 927 Gene3D - 714 927 IPR039261 -
Seca12g06543 927 Pfam Respiratory burst NADPH oxidase 145 244 IPR013623 GO:0004601|GO:0050664
Seca12g06543 927 SUPERFAMILY EF-hand 173 323 IPR011992 -
Seca12g06543 927 Coils Coil 272 292 - -
Seca12g06543 927 Pfam Ferric reductase like transmembrane component 404 560 IPR013130 -
Seca12g06543 927 CDD NOX_Duox_like_FAD_NADP 606 869 - -
Seca12g06543 927 Pfam FAD-binding domain 603 716 IPR013112 GO:0016491
Seca12g06543 927 PANTHER NADPH OXIDASE 206 927 - -
Seca12g06543 927 MobiDBLite consensus disorder prediction 74 94 - -
Seca12g06543 927 ProSitePatterns EF-hand calcium-binding domain. 254 266 IPR018247 -
Seca12g06543 927 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 599 719 IPR017927 GO:0016491
Seca12g06543 927 PRINTS Cytochrome B-245 heavy chain signature 728 745 IPR000778 GO:0016020|GO:0016491
Seca12g06543 927 PRINTS Cytochrome B-245 heavy chain signature 705 718 IPR000778 GO:0016020|GO:0016491
Seca12g06543 927 PRINTS Cytochrome B-245 heavy chain signature 505 528 IPR000778 GO:0016020|GO:0016491
Seca12g06543 927 Pfam Ferric reductase NAD binding domain 723 909 IPR013121 GO:0016491
Seca12g06543 927 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 721 927 IPR039261 -
Seca12g06543 927 MobiDBLite consensus disorder prediction 19 36 - -
Seca12g06543 927 Gene3D - 146 262 - -
Seca12g06543 927 ProSiteProfiles EF-hand calcium-binding domain profile. 241 276 IPR002048 GO:0005509
Seca12g06543 927 Gene3D Translation factors 591 682 - -
Seca12g06543 927 SUPERFAMILY Riboflavin synthase domain-like 602 715 IPR017938 -
Seca12g06543 927 MobiDBLite consensus disorder prediction 1 36 - -
Seca12g06543 927 FunFam Respiratory burst oxidase homolog A 146 262 - -
Seca12g06543 927 SFLD NADPH oxidase subgroup (NOX) 104 927 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06543 Seca-Chr12 157541363 157550870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06543 9 927 Miscellaneous Gene Families AT1G64060 77.566 0.0 1517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06543 K13447 - gmx:100801077 1709.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06543 12 157541363 157550870 Seca12g06543 12 157541363 157550870 ECH
Seca12g06543 12 157541363 157550870 Seca12g06543 12 157541363 157550870 PCT