Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06536 ATGAAGTGCAGATCGGTGGCGTGCATATGGTCCGGCACGCCCTTCCCCCACGCACACAGAGTGACCGCCGTTGCCGCTTTCACCGAACCTCCAACTCCCACCTTTTACACCGCCGGATCCGATGGCTCTATCATCTGGTGGACCCTTTCCACTTCCACTCCCATCCCGCAAGTTAAAGCCGTGGGCATGTTGTGTGGTCACGCAGCTCCCATCACTGATCTTGGCCTTTGTAGTCCCATCGCAGCAGAAGAAAACGGTTATGGTTCAAGTAGAAGTAATTTTAGTGCGTTGATCAGTGCATGTTGTGATGGGTTCTTGTGTGTGTGGAGTAATAGCAGTGGACATTGCCGGTGCAGGAGGAAATTGCCGCCTTGGGTGGGCACTCCGCGCATGATTCGAACACTTCTTTCAACACCAAGATATGTGTGTATAGCTTGCTCTTTTGTGGACCATTCTGTTAATTCCGTGGATGGAAATGAAGACCTAATGGATAGAGAAACACATCCCAGGAAGCCCCCTAAATGCACTATCCTTATTGTGGACACATATTCACTTTCCATTACCCAAACCGTCTTTCATGGAAATCTATCCATTGGTCCTATCAAGTTTATGGCACTAGTCTTTGCTGATGATGATGATGAGAAGAGGCATTCGGTGTTTGTGGCTGATTCAGCTGGGAAGCAACAGATGATTTCGATATCAGAGGACCCTCGTGATGGCGGGGAAAGCTTGGCAAGTTCACACAAAGATAAATCTCAGTTGGAAAGTTCTTTTAGCTCTGAGGGATTCAGTGGTGTGGATCAAGTTATTTCAGTTTTAACCTATGGGAACATAGTTGCTTTTATATTGAAAAATCGTTGTATTTTTAGGTCATTGTCTAGTGATACTACAATTGGAGAGGTTTTTTTTCTGGACAATCTTTTTTGTTTGGATGAGCATTCCACACAAGCACATGCTACCGGTGGCACTTTTCTTGAAAGTGATGATGTGGGGAATATGCCTAATACCCTTGAAGGTGGCAATTTGATTCCGCTACATTTTGTTGTGTGGAATAATAGAGGTTATGCAATTATCTACAAAATATCGTATCAGAATGATGTTTTTCAATGTGAACCTCATTCTGAAATTCCTGCTACTCATTATCAGCCTGATATGAGATTATCTATCTTTTTCCTACAAGTAAATCAATATCTTGTACGCATCAAGTCAGTTTGCTTTCATTATGAGGAACCTTTACTATGGAGACCGCATGTCACAGTCTGGTCACTGCATCATTTTGATGATAAACCTGGTAAATTGTACCGTCAATGCCGAATGATCAGTGATGGTGTATCTTTCACCAATTGGTCTGAGAGGTCTATTCAACTCAAGAGACTGGATGATCTAGAGACTGCATCAACTTTTGGTGATGATATAGACAACTTGCATGTCAATAGCATAAGTAATTGTCATGCTTACAAGGGGAAGATAGTTTCTTCTTCTATGATTATCTCTGAGAACCTCTTTACTCCTTATGCTGTTGTATATGGATTTTTGAGTGGAGACATAGAGGTTGTAAGATTTGACCTGTTTCAAGGGATTTGCTTGGATGGTGCAAGTTCCAATCCTGATGAACAGTCAGCTGCTTGCAAACAGTATTTCTCAGGACATACAGGTGCGGTACTTTGTTTGGCAGCACATCAAATGACGGGTAGTGCTAAAAGCCAGTCTTTTAAACGGGTTTTAGTGTCTGGAAGTATCGATTGCACAATTCGTATATGGGATCTTGACACTGGCAGTCTTATTATGGTAATGCATCATCATGTGGCTGCAGTGCGTCAAATTATTCTCCCCCCATCTTTGACTGGACATCCTTGGAGTGACTGCTTCATTTCAGTTGGAGAGGATGCATGTGTTGGTCTTGTTTCTCTTGAGACCCTGCAGGTGGAGAGAATGTTTCCTGGACATATGAACTATCCTTCTAAAGTTTTGTGGGACGGAGCAAGAGGTTATGTTGCCTGTCTCTGTCAAACGCATTATGGAACTTCTGATGGTGATGTATTATACATTTGGGATGTAAAGACTGGTTCCCGTGAGCGAGTCCTACGTGGAACAGCTGCACATTCAATGTTTGATCATTTTTGTAAAAGCATCAGCATGAATTCCATATCTGGCTCATTGCTGAATGGAAATACATCAGTCTCTTCATTACTTCTTCCAATAGTTGATGATGCAAGGTTCTCTAACTCCCCCTTAAGTCTGTCCAAGAACTTGCTTACTTCATCAAGGTCATCACCAAGTATTTCGAATATGGCTGAGCTGAATTCTTCCAAAACAAATGCAGGAAAAGGATATTCAGCAAAGCCGAATTCATCCTCTCTGATTGGTCTCCTGAGTAACAAGCTTCCTATCAGATGCTCTTGCCCATTCCCTGGCATTGTGTCTCTGAGCTTTGATCTTGCGTCATTGATGTTCCCTTTTCAAAAGAAGGAGTCCATGGAAAATGGTGATGGCAAGCCAGTGAATATCAATTTGAAGCAGCAGGAAGTTCAGGAGCAAAATCCCAGCTACCATAATCCAGAAACATTAGAGGGGCATGACTGGGTTAGCCTATTTGAAGAATACTTGATCCGCTACAGCTTGTCATTTTTACATTTGTGGAGTGTAGATACCGAGCTTGATAATTTGCTGATAAGTGATATGAAATTGAGGAGACCAGAAAACTTTATAGTAGCTTCAGGTCTGCAGGGGGATAAAGGTTCCTTGACATTGACATTTCCTGGTCAAAAGGCTACACTTGAGCTCTGGAAATCATCATCTGAGTTTTGTGCAATGAGGTCATTGACGATGGTATCCCTTGCCCAACGTTTAATTAGCTTGTCTCACTCTGGTTCAGCAGCCAGCAGTGCTTTAGCAGCATTCTATACCCGGAATTTCACGGAAAAATTTCCAGATCTGAAGCCCCCTTCATTACAGCTCTTGGTGGCTTTTTGGCAAGATGAAAGTGAACATGTACGTATGGCGGCACGCTCTATATTCCATTGTGCTGCGTCTCATGCTATTCCTCTACCTCTTTGCAATTCAAAACCTACTGAGTCAACTAATACAAGCTCTGGAAATGGAAGTAGAGACAAACTTCTGGGAGATATGACAGCAGAGGGCCTATCTCCTAAGGCAGAAAAACGAGGGATTTCCCAAGATGTGGAATCCAAGATACTTTCTTGGCTAGAATCATTTGAAGTGCAAGATTGGATTTCTTGTGTTGGTGGAACAAGTCAAGATGCAATGACATCTCACATTATTGTTGCTGCTGCACTGGCTATCTGGTACCCTAGTCTTGTAAAGCCAAGTCTTTCCACATTAGTTGTTCATCCATTAATCAAGTTGGCCATGGCCATGAATGAGAAGTACAGCTCCACTGCTGCTGAGCTCCTTGCAGAGGGCATGGAGAGCACATGGAAAGAATGCATTGTCTCTGAGATTCCTCGTCTTATTGGGGATATTTTTTTCCAAGTAGAGTTGAGTGGTCCATCTTCCAAGTCAATGACAGAAATTCCAGTTGCATCTTTTTCTATTAAACAGACTTTAGTGGAGGTTCTTCTTCCAAGTTTAGCTATGGCTGATATACCAGGATTTTTGGCTGTGATAGAAAGCCAAATTTGGTCAACTGCATCTGATTCACCTGTCCACCTGGTGTCCTTGTTGACTCTTATAAGGATCATGCGTGGTTCTCCAAGAAATTTGGCTCAGTATCTTGACAAGGTTGTTAACTTCATTCTACAGACTATAGATCCTAGCAACTCAGTTATGCGGAAGGCATGCTTCCAGAGTTCAATGACAACTTTAAAGGAAGTTGTACGTGTATATCCTATGGTTGCTGTCAATGAGTCATGGACCAGACTGGCAGTTGGAGATGTGATTGGAGAAATTAACAATGCAAGCATTCGTGTCTATGATATGCAAAGTGTGACAATGATAAAGGTTTTGGATGCAAGTGGGCCTCCTGGGCTTCCAAGTTTGCTCACTGCAGCAGCATCGGGAACAGTGTTGACTACTGCTATTTCAGCGCTAAGCTTTTCTCCAGACGGAGAGGGTCTGGTTGCTTTTTCGGAACATGGGCTAATGATTAGATGGTGGTCACTGGGATCTTTCTGGTGGGAGAAACTGAGCCGGAACTTTGTTCCTGTCCAGTGCACCAAACTAATCTTTGTTCCTCCTTGGGAGGGATTCTCACCTAATTCATCCAGATCAAGCATTATGGCCAACATTTTGGAAACTGACAGGCAGTTGGATTTTCAGCGGAGATTGATTGCCAAGGGGAAGATGCTAAGTTGGAAAGTCCTTATTAGTTGCACTTGA 4338 0.4299 MKCRSVACIWSGTPFPHAHRVTAVAAFTEPPTPTFYTAGSDGSIIWWTLSTSTPIPQVKAVGMLCGHAAPITDLGLCSPIAAEENGYGSSRSNFSALISACCDGFLCVWSNSSGHCRCRRKLPPWVGTPRMIRTLLSTPRYVCIACSFVDHSVNSVDGNEDLMDRETHPRKPPKCTILIVDTYSLSITQTVFHGNLSIGPIKFMALVFADDDDEKRHSVFVADSAGKQQMISISEDPRDGGESLASSHKDKSQLESSFSSEGFSGVDQVISVLTYGNIVAFILKNRCIFRSLSSDTTIGEVFFLDNLFCLDEHSTQAHATGGTFLESDDVGNMPNTLEGGNLIPLHFVVWNNRGYAIIYKISYQNDVFQCEPHSEIPATHYQPDMRLSIFFLQVNQYLVRIKSVCFHYEEPLLWRPHVTVWSLHHFDDKPGKLYRQCRMISDGVSFTNWSERSIQLKRLDDLETASTFGDDIDNLHVNSISNCHAYKGKIVSSSMIISENLFTPYAVVYGFLSGDIEVVRFDLFQGICLDGASSNPDEQSAACKQYFSGHTGAVLCLAAHQMTGSAKSQSFKRVLVSGSIDCTIRIWDLDTGSLIMVMHHHVAAVRQIILPPSLTGHPWSDCFISVGEDACVGLVSLETLQVERMFPGHMNYPSKVLWDGARGYVACLCQTHYGTSDGDVLYIWDVKTGSRERVLRGTAAHSMFDHFCKSISMNSISGSLLNGNTSVSSLLLPIVDDARFSNSPLSLSKNLLTSSRSSPSISNMAELNSSKTNAGKGYSAKPNSSSLIGLLSNKLPIRCSCPFPGIVSLSFDLASLMFPFQKKESMENGDGKPVNINLKQQEVQEQNPSYHNPETLEGHDWVSLFEEYLIRYSLSFLHLWSVDTELDNLLISDMKLRRPENFIVASGLQGDKGSLTLTFPGQKATLELWKSSSEFCAMRSLTMVSLAQRLISLSHSGSAASSALAAFYTRNFTEKFPDLKPPSLQLLVAFWQDESEHVRMAARSIFHCAASHAIPLPLCNSKPTESTNTSSGNGSRDKLLGDMTAEGLSPKAEKRGISQDVESKILSWLESFEVQDWISCVGGTSQDAMTSHIIVAAALAIWYPSLVKPSLSTLVVHPLIKLAMAMNEKYSSTAAELLAEGMESTWKECIVSEIPRLIGDIFFQVELSGPSSKSMTEIPVASFSIKQTLVEVLLPSLAMADIPGFLAVIESQIWSTASDSPVHLVSLLTLIRIMRGSPRNLAQYLDKVVNFILQTIDPSNSVMRKACFQSSMTTLKEVVRVYPMVAVNESWTRLAVGDVIGEINNASIRVYDMQSVTMIKVLDASGPPGLPSLLTAAASGTVLTTAISALSFSPDGEGLVAFSEHGLMIRWWSLGSFWWEKLSRNFVPVQCTKLIFVPPWEGFSPNSSRSSIMANILETDRQLDFQRRLIAKGKMLSWKVLISCT. 1446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06536 1445 SUPERFAMILY Nucleoporin domain 17 223 - -
Seca12g06536 1445 Gene3D - 471 773 IPR015943 GO:0005515
Seca12g06536 1445 SUPERFAMILY WD40 repeat-like 16 697 IPR036322 GO:0005515
Seca12g06536 1445 MobiDBLite consensus disorder prediction 1021 1037 - -
Seca12g06536 1445 Gene3D - 3 285 IPR015943 GO:0005515
Seca12g06536 1445 MobiDBLite consensus disorder prediction 1021 1042 - -
Seca12g06536 1445 MobiDBLite consensus disorder prediction 231 251 - -
Seca12g06536 1445 PANTHER RABCONNECTIN-3B, ISOFORM A 3 1431 - -
Seca12g06536 1445 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 548 599 - -
Seca12g06536 1445 Pfam WD domain, G-beta repeat 543 588 IPR001680 GO:0005515
Seca12g06536 1445 SMART WD40_4 57 110 IPR001680 GO:0005515
Seca12g06536 1445 SMART WD40_4 5 48 IPR001680 GO:0005515
Seca12g06536 1445 SMART WD40_4 1339 1373 IPR001680 GO:0005515
Seca12g06536 1445 SMART WD40_4 639 685 IPR001680 GO:0005515
Seca12g06536 1445 SMART WD40_4 540 588 IPR001680 GO:0005515
Seca12g06536 1445 SUPERFAMILY ARM repeat 946 1304 IPR016024 -
Seca12g06536 1445 ProSitePatterns Trp-Asp (WD) repeats signature. 575 589 IPR019775 -
Seca12g06536 1445 ProSiteProfiles Trp-Asp (WD) repeats profile. 575 597 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06536 Seca-Chr12 157421907 157431960 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06536 K24738 - gmx:100816646 2324.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06536 12 157421907 157431960 Seca12g06536 12 157421907 157431960 ECH