Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06533 ATGGGGCTTATGACCATGGACCAACCTCAATTGTTGTCTAAGATTGCCACCGGAGACGGACACGGTGAATCATCTCCATACTTTGATGGATGGAAGGCTTATGATGAAGACCCTTTCCATTCCACCAATAATCCTAATGGGGTTATCCAGATGGGTCTTGCAGAGAATCAGCTTACATCTGACTTGGTTCAAGATTGGTTAATGAGTAACCCAGAAGCCTCAATTTGCACTCCAGAAGGAGTGCATAATTTCAAGGCCCTGGCAAACTTTCAGGATTATCATGGTCTGCTGGAGTTCAGAAATGTCACTGCCTTTTGTTTGGCAGATCCCGGTGATGCATTTTTGGTGCCCACTCCCTATTATCCAGGATTTGATCGGGATTTGAGGTGGAGAACAGGAGTTCAACTTGTTCCAGTTATCTGTGAAAGCTCAAACAATTTCAAATTAACAAGGGAAGCCTTGGAAGTTGCTTTTGAGAAAGCCAAAGAGGATAACATCAGAGTAAAGGGCTTACTCATTACTAATCCATCAAATCCATTAGGAACTGTCATGGACAGAAACACATTAAGAACTGTGGTAAGCTTCATCAATGAAAAGCACATACACCTAGTATGTGATGAAATATATGCTGCTACAGTTTTTAGCCATCCTGGTTTCATTAGCATTGCTGAGATAATAGAGGAAGAAACAGACATTGAATGTGACCGTGACCTCATTCACATTGTTTATAGTCTTTCAAAGGATATGGGGTTCCCTGGCTTTAGAGTTGGCATCATATACTCATACAATGATGCTGTTGTCCATTGTGCTCGCAAAATGTCCAGCTTTGGATTAGTGTCAACACAAACCCAATATCTTATAGCATCAATACTATCTGATGATGAGTTTGTGGAAAGGTTCCTTGCTGAGAGTTCAAAGAGGCTAGCCCAAAGGTACAGAGTTTTCACTGGTGGGTTAGCCAAAGTTGGCATAAAGTGCTTGCAGAGTAATGGTGGTCTCTTTGTATGGATGGATTTGCGTGATCTTCTCAAGAAGCCAACTTATGAATCAGAAATGGAACTGTGGAGAGTGATCATTCATGAAGTTAAGATCAATGTTTCACCTGGTTCTTCTTTTCATTGCTCTGAGCCAGGGTGGTTCAGGGTATGTTATGCCAATATGGATGATAGGACTGTGCAAGTTTCTTTGCAAAGGATTAGAAACTTTGTTCTTCAAAATAAGGAGGTGATGGTACCTGAGAAGAGGTCTTGCTGGCAGAGCAATTTAAGGCTAAGCCTCAAAGCCAGAAGGTTTGATGATATCATGATGTCACCTCATTCCCCTATGCCTCAGTCACCTCTAGTTAAAGCCACCATTTAA 1359 0.4172 MGLMTMDQPQLLSKIATGDGHGESSPYFDGWKAYDEDPFHSTNNPNGVIQMGLAENQLTSDLVQDWLMSNPEASICTPEGVHNFKALANFQDYHGLLEFRNVTAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVICESSNNFKLTREALEVAFEKAKEDNIRVKGLLITNPSNPLGTVMDRNTLRTVVSFINEKHIHLVCDEIYAATVFSHPGFISIAEIIEEETDIECDRDLIHIVYSLSKDMGFPGFRVGIIYSYNDAVVHCARKMSSFGLVSTQTQYLIASILSDDEFVERFLAESSKRLAQRYRVFTGGLAKVGIKCLQSNGGLFVWMDLRDLLKKPTYESEMELWRVIIHEVKINVSPGSSFHCSEPGWFRVCYANMDDRTVQVSLQRIRNFVLQNKEVMVPEKRSCWQSNLRLSLKARRFDDIMMSPHSPMPQSPLVKATI. 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06533 452 CDD AAT_like 106 400 - -
Seca12g06533 452 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 244 257 IPR004838 GO:0003824|GO:0009058|GO:0030170
Seca12g06533 452 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 270 293 - -
Seca12g06533 452 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 165 189 - -
Seca12g06533 452 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 51 77 - -
Seca12g06533 452 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 238 262 - -
Seca12g06533 452 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 201 224 - -
Seca12g06533 452 SUPERFAMILY PLP-dependent transferases 21 403 IPR015424 -
Seca12g06533 452 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 12 101 - -
Seca12g06533 452 Gene3D - 102 293 IPR015421 GO:0003824
Seca12g06533 452 Pfam Aminotransferase class I and II 102 399 IPR004839 GO:0009058|GO:0030170
Seca12g06533 452 Gene3D Aspartate Aminotransferase, domain 1 11 84 IPR015422 GO:0003824
Seca12g06533 452 Gene3D Aspartate Aminotransferase, domain 1 294 398 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06533 Seca-Chr12 157378112 157381168 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06533 K20772 - gmx:547976 785.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06533 12 157378112 157381168 Seca12g06533 12 157378112 157381168 ECH
Seca12g06533 12 157378112 157381168 Seca12g06533 12 157378112 157381168 PCT