Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06531 ATGCCTTCTTCAGTTCGCAGATTCACAATGGCAGCAATGTCTAACTCCTTGTCACTGAAGCATGGCCTCTCTCTTTGGTGTCCCCAAACAACCTCTCTGACTCAGAGTCGAGCTCATCCTTCTTCCACTTCCCTCGCATTCAGACCCTTCCGGAGATGCTATGCCGCTTTCGCAAACGAGAATCGCGAGTATGTGATTGTTGGTGGCGGAAACGCAGCGGGTTATGCTGCTCGCACATTCGTCGAGCACGGCATGGCTGATGGTCGCCTTTGTATTGTGACCAAAGAGGCATATGCACCTTACGAGCGTCCCGCTCTGACGAAAGCCTATTTGTTCCCGCCAGATAAGAAACCAGCACGCCTTCCTGGGTTTCACACTTGTGTTGGATCTGGTGGAGAAAGGCAAACTCCGGAATGGTATAAAGAGAATGGGATAGAGATGGTATATGAAGATCCAGTAGAAAATATTGATATTGAAAAGCAAACTTTGACAACAAGTTCTGGAAAACTTCTTAAATATGGATCACTCATTGTTTCTACAGGATGTACGGCCTCAAGGTTTCCTGAGAAAATTGGAGGAAACCTACCTGGTGTTCACTATATACGGGATGTTGCAGATGCTGATGCACTGATTTTATCATTGCAAAAAGCAAAAAAGGTTGTAGTTGTTGGAGGTGGTTATATAGGAATGGAGGTTGCTGCAGCAGCTGTTGGTTGGAACCTTGATACAACAATCATATTTCCAGAAGATCACCTTTTACAAAGATTGTTCACTCCTTCTCTTGCCCAAAGATATGAAGAACTCTACCAAAAGAATGGAGTCAAAATCTTGAAGGGTGCCTCCATAAAAAATTTGGAAGCTGGTTCTGACGGACACGTAGCTGCTGTGAAACTTGGAGATGGATCTATTGTAGAAGCAGATACGGTAATTATAGGCATTGGAGCAAAACCTACTGTGAGTCCCTTTGAGAGGGTGGGCCTGAATACAGATGTTGGTGGTATACAGGTTGATGGTCAATTCCGGACGAGCATTCCTGGAATATTTGCTGTTGGTGATGTCGCAGCCTTCCCTTTAAAGATCTATGACCGTACTGCTCGAGTGGAACATGTAGATCATGCTCGTCGTTCTGCACAGCACTGTGTGAAAGCATTACTCAGTGCACAAACTCACACGTATGATTATCTTCCATACTTCTACTCAAGGGTTTTTGAATATGAAGGGAGCCCTAGAAAAGTATGGTGGCAGTTCTTCGGAGACAATGTTGGAGAAACGGTTGAAATTGGAAATTTTGATCCTAAAATAGCTACCTTTTGGATTGAATCTGGTAATGGATTTTTTTTACTGTCCCTCTCTCCCTGTATGTAG 1365 0.4425 MPSSVRRFTMAAMSNSLSLKHGLSLWCPQTTSLTQSRAHPSSTSLAFRPFRRCYAAFANENREYVIVGGGNAAGYAARTFVEHGMADGRLCIVTKEAYAPYERPALTKAYLFPPDKKPARLPGFHTCVGSGGERQTPEWYKENGIEMVYEDPVENIDIEKQTLTTSSGKLLKYGSLIVSTGCTASRFPEKIGGNLPGVHYIRDVADADALILSLQKAKKVVVVGGGYIGMEVAAAAVGWNLDTTIIFPEDHLLQRLFTPSLAQRYEELYQKNGVKILKGASIKNLEAGSDGHVAAVKLGDGSIVEADTVIIGIGAKPTVSPFERVGLNTDVGGIQVDGQFRTSIPGIFAVGDVAAFPLKIYDRTARVEHVDHARRSAQHCVKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETVEIGNFDPKIATFWIESGNGFFLLSLSPCM. 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06531 454 PRINTS Pyridine nucleotide disulphide reductase class-I signature 63 85 - -
Seca12g06531 454 PRINTS Pyridine nucleotide disulphide reductase class-I signature 347 354 - -
Seca12g06531 454 PRINTS Pyridine nucleotide disulphide reductase class-I signature 307 321 - -
Seca12g06531 454 PRINTS Pyridine nucleotide disulphide reductase class-I signature 219 244 - -
Seca12g06531 454 Gene3D - 397 452 IPR016156 GO:0016491|GO:0050660
Seca12g06531 454 Gene3D - 65 380 IPR036188 -
Seca12g06531 454 PRINTS FAD-dependent pyridine nucleotide reductase signature 65 84 - -
Seca12g06531 454 PRINTS FAD-dependent pyridine nucleotide reductase signature 306 322 - -
Seca12g06531 454 PRINTS FAD-dependent pyridine nucleotide reductase signature 332 354 - -
Seca12g06531 454 PRINTS FAD-dependent pyridine nucleotide reductase signature 173 191 - -
Seca12g06531 454 PRINTS FAD-dependent pyridine nucleotide reductase signature 219 237 - -
Seca12g06531 454 Gene3D - 187 314 IPR036188 -
Seca12g06531 454 PANTHER APOPTOSIS-INDUCING FACTOR 1 62 442 - -
Seca12g06531 454 Pfam Pyridine nucleotide-disulphide oxidoreductase 63 377 IPR023753 GO:0016491
Seca12g06531 454 SUPERFAMILY FAD/NAD(P)-binding domain 58 384 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06531 Seca-Chr12 157360607 157365930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06531 170 396 Acyl Lipid Metabolism Gene Families AT1G48030 26.971 1.26e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06531 K08232 - gmx:100819919 780.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06531 12 157360607 157365930 Seca12g06531 12 157360607 157365930 ECH