Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06522 ATGTGTATATATAGACACACATACACACCTACAATGTCATTCTATGTAAACATACCAATAGGTCAACTTCACTTCTGTTCTCTCCCAGAAAAAACTCAGGTGGTCATGGATGTGTTATTATTATTACTAGCTCTGATGGTATTGGTTGCTTTGCCAAGCCTGACTGTAATAGAGAGCCGCAGAACTCCAGCTTTGGACTATTTTGAGTACTGTGCTGTGAGCTGCAGAGCTTACAGTGCATCAGTGACAGAATTTGGAGGGGTTGGAGATGGAAAAACTTTGAACACACAAGCCTTTCAGACAGCCATAGATCATCTGAGCCAGTACTCATCAACTGGAGGGTCTCAACTTTATGTTCCTCCAGGAAGATGGTTGACTGGCAGCTTCAATCTCACCAGTCATTTCACTTTATTTCTCCACAAGGATGCTGTACTTCTTGGTTCTCAGGATGAAAATGACTGGCCAGTGATTGATCCCCTGCCATCTTATGGTAGAGGGAGGGACACTCAAGGTGGAAGGTTTAGCAGTCTAATTTTTGGAACTAACCTCACAGATGTAGTCATAACTGGGGACAATGGCACAATAGATGGACAAGGTGATCTGTGGTGGCAAAAATTCCACAATGGGAAGCTCAGTTATACCCGGCCTTACCTGATTGAAATCATGTACTCAACTAATGTTCAGATATCTAATCTCACTTTGGTTAATTCTCCATCGTGGAATGTCCATCCTGTTTACAGCAGCAACGTTATTGTTCAAGGCATCACAATTCTTGCTCCTGTGACATCTCCAAATACAGATGGAATTAACCCTGATTCTTGCACAAACACACGAATTGAGGACTGTTATATTGTGTCTGGGGATGACTGTGTGGCAGTGAAGAGTGGTTGGGATGAGTATGGTATATCTTATGGAATGCCAACAAAGCAGCTAGTAATCAGAAGACTCACTTGTATCTCTCCATTCAGTGCTGTGATTGCTTTAGGGAGCGAGATGTCTGGTGGAATTCAGGATGTCAGGGCTGAAGACATTGTTGCTATCAATTCAGAGTCAGGAGTAAGGATCAAAACTGCTGTAGGAAGAGGAGGATATGTCAAGGACATATATGTTAGAAGGATGACTATGAAAACAATGAAATGGGCATTCTGGATGACAGGAAATTATGGGTCTCATGCTGACAACAACTATGATCCTAATGCACTTCCTGTGATTCAGAATATTAATTATCGTGATATGGTTGCTGAGAATGTGACTATGGCAGCAAGGTTGGAGGGTATATCTGGTGATCCATTTACTGGAATATGCATATCCAATGTAACCATTGAACTAGCAAAGAAAGCTAAAAAAGTTCCATGGACTTGCGCTGATGTTGCTGGGATTTCAAGTGATGTGACTCCTGCTCCATGTGAACTGTTGCCAGACCAGGGAGTAGAGAAGATTGGGGCATGTACCTTCCCAGAAGACAGTTTGCCCATCGAAGATGTTCAGGTTCAAACATGTACTTATAGAAGGAATGTATGA 1521 0.4234 MCIYRHTYTPTMSFYVNIPIGQLHFCSLPEKTQVVMDVLLLLLALMVLVALPSLTVIESRRTPALDYFEYCAVSCRAYSASVTEFGGVGDGKTLNTQAFQTAIDHLSQYSSTGGSQLYVPPGRWLTGSFNLTSHFTLFLHKDAVLLGSQDENDWPVIDPLPSYGRGRDTQGGRFSSLIFGTNLTDVVITGDNGTIDGQGDLWWQKFHNGKLSYTRPYLIEIMYSTNVQISNLTLVNSPSWNVHPVYSSNVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGISYGMPTKQLVIRRLTCISPFSAVIALGSEMSGGIQDVRAEDIVAINSESGVRIKTAVGRGGYVKDIYVRRMTMKTMKWAFWMTGNYGSHADNNYDPNALPVIQNINYRDMVAENVTMAARLEGISGDPFTGICISNVTIELAKKAKKVPWTCADVAGISSDVTPAPCELLPDQGVEKIGACTFPEDSLPIEDVQVQTCTYRRNV. 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06522 506 FunFam Glycoside hydrolase family 28 protein 66 463 - -
Seca12g06522 506 Pfam Glycosyl hydrolases family 28 173 449 IPR000743 GO:0004650|GO:0005975
Seca12g06522 506 SUPERFAMILY Pectin lyase-like 71 474 IPR011050 -
Seca12g06522 506 PANTHER PECTIN LYASE-RELATED 48 494 - -
Seca12g06522 506 Pfam Pectate lyase superfamily protein 81 137 IPR024535 -
Seca12g06522 506 Gene3D - 69 464 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06522 Seca-Chr12 157265163 157270149 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06522 24 503 Glycoside Hydrolase AT3G61490 68.378 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06522 - - gmx:100785841 900.968
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06522 12 157265163 157270149 Seca12g06522 12 157265163 157270149 ECH