Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06510 ATGGGATACGGTGAAAAAGGACGACCCTTCAAAAAGCTCAAAGCCTCCGCTAAATTCGAAGATGCCCGAAAAGGATTCGCCGACGATGACGATGTATATGGCGGCGAAGATGCATACGACGATGACGAAGCCAAAACCAAGGATTTTAGCAAATTAGAGCTGAAACCGGATCACCCCAACCGCCCTCTATGGGCTTGTGGCAATGGCCGCATATTCCTCGAGACCTTCTCTCCTTTGTACAAGCAAGCCTACGATTTTCTTATTACCATTGCCGAGCCTGTTTGCAGGCCTGAGAATATGCACGAATACAATCTTACTCCACATTCACTGTATGCTGCGGTTTCGGTTGGTCTAGAAACGGAAACAATCATAGCTGTGTTGAACAAATTATCCAAGACCAAGCTTCCAAAAGAGATGATTAAATTTATACATGATTCTACTGCAAATTATGGCAAAGTGAAACTCGTCCTTAAGAAGAATCACTACTTTGTTGAATCTCCATTTCCAGAGGTATTGAAGACACTGCTCAGGGATGATACTATATCTCGAGCAAGGATTACTCATGAGGGGACAAATGGAGACGGATTTACAATCAGCAAAGCAGCAGGTGAAGTTGAAGGCACTCATGATGAGTTGCTGAATGAAGCAGAAGTGGCAGCGGCTGCAGAAGAGAAAGAAGCTCATTCATTTGAAATTGATCCTTCTCAGGTTGAAAATGTAAAGCAACGTTGCTTGCCAAATGCATTGAATTATCCCATGTTGGAGGAATATGACTTCAGAAATGATACAGTGAACCCGGACCTCGACATGGAACTAAAGCCTCAAGCACAACCACGGCCATATCAAGAGAAGAGCCTTAGTAAAATGTTTGGAAATGGTAGAGCAAGATCCGGTATAATAGTTCTACCTTGTGGTGCTGGAAAATCCCTAGTTGGTGTTTCTGCAGCTTGCCGGATAAAAAAGAGCTGCCTTTGTTTGGCAACAAATGCTGTCTCTGTAGATCAGTGGGCTTTTCAGTTTAAACTATGGTCAACTATCCGAGAGGAACAGATATGTCGTTTCACATCTGATAGCAAAGAGAGATTCCGTGGTAATGCTGGAGTTGTTGTTACTACATATAATATGGTTGCTTTTGGTGGTAAGCGGTCTGAAGAATCTGAAAAGATCATTGAAGAAATAAGAAACAGAGAATGGGGATTGCTCCTCATGGATGAGGTACATGTGGTTCCAGCCCATATGTTCAGGAAAGTCATTAGTATCACTAAATCTCACTGCAAACTTGGGCTCACAGCTACACTTGTGAGAGAGGACGAACGGATTACCGATCTGAACTTCCTAATTGGTCCCAAGCTGTATGAGGCAAATTGGTTAGATCTTGTTAAAGGTGGGTTTATTGCAAATGTACAGTGTGCTGAAGTATGGTGTCCAATGACAAAAGAGTTTTTTGCCGAGTATTTGAAGAAAGAGAACTCCAAGAAAAGGCAGGCCCTTTATGTGATGAATCCAAATAAATTCAGAGCTTGTGAGTTTCTCATAAATTACCATGAAAGAGCACGTGGTGATAAAATTATAGTCTTTGCTGATAATCTTTTTGCTCTCACTGAGTATGCCATGAAACTCCGCAAACCAATGATATATGGTGCTACAAGGTGCTCTGGACATATATTGACCTTTTTTTGA 1680 0.4202 MGYGEKGRPFKKLKASAKFEDARKGFADDDDVYGGEDAYDDDEAKTKDFSKLELKPDHPNRPLWACGNGRIFLETFSPLYKQAYDFLITIAEPVCRPENMHEYNLTPHSLYAAVSVGLETETIIAVLNKLSKTKLPKEMIKFIHDSTANYGKVKLVLKKNHYFVESPFPEVLKTLLRDDTISRARITHEGTNGDGFTISKAAGEVEGTHDELLNEAEVAAAAEEKEAHSFEIDPSQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIREEQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKRQALYVMNPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATRCSGHILTFF. 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06510 559 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 289 451 IPR014001 -
Seca12g06510 559 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 453 IPR027417 -
Seca12g06510 559 Gene3D - 268 459 IPR027417 -
Seca12g06510 559 Pfam Helicase conserved C-terminal domain 63 186 IPR032830 -
Seca12g06510 559 PRINTS Xeroderma pigmentosum group B protein signature 147 166 - -
Seca12g06510 559 PRINTS Xeroderma pigmentosum group B protein signature 463 485 - -
Seca12g06510 559 PRINTS Xeroderma pigmentosum group B protein signature 290 312 - -
Seca12g06510 559 PRINTS Xeroderma pigmentosum group B protein signature 521 543 - -
Seca12g06510 559 PRINTS Xeroderma pigmentosum group B protein signature 397 417 - -
Seca12g06510 559 PRINTS Xeroderma pigmentosum group B protein signature 61 81 - -
Seca12g06510 559 PRINTS Xeroderma pigmentosum group B protein signature 259 285 - -
Seca12g06510 559 PRINTS Xeroderma pigmentosum group B protein signature 501 516 - -
Seca12g06510 559 NCBIfam DNA repair helicase rad25 48 550 IPR001161 GO:0003678|GO:0006289|GO:0006367
Seca12g06510 559 FunFam Probable DNA repair helicase RAD25 268 459 - -
Seca12g06510 559 PANTHER RAD25/XP-B DNA REPAIR HELICASE 52 551 - -
Seca12g06510 559 Gene3D - 460 552 IPR027417 -
Seca12g06510 559 Pfam Type III restriction enzyme, res subunit 277 433 IPR006935 GO:0003677|GO:0005524|GO:0016787
Seca12g06510 559 CDD DEXHc_XPB 270 439 - -
Seca12g06510 559 Pfam ERCC3/RAD25/XPB C-terminal helicase 459 550 IPR032438 -
Seca12g06510 559 SMART ultradead3 274 455 IPR014001 -
Seca12g06510 559 Coils Coil 213 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06510 Seca-Chr12 157094914 157102981 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06510 K10843 - gmx:100789550 1033.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06510 12 157094914 157102981 Seca12g06510 12 157094914 157102981 ECH