Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06505 ATGTCTTCCCCAAGCAAACGCCGAGACATGGACTTGATGAAGCTGATGATGAGTGATTACAAGGTGGAGATGATCAACGATGGCATGCAAGAGTTCTTTGTGGAATTCCATGGACCTAAAGACAGTCCTTATCAGGAAGGTGTATGGAAGATAAGAGTGGAGCTACCTGATGCTTATCCTTATAAGTCTCCGTCCATTGGTTTTGTCAACAAAATTTACCATCCTAATGTTGATGAAATGTCTGGTTCAGTTTGCTTAGATGTTATTAATCAGACTTGGAGTCCCATGTTTGACCTTGTCAATGTGTTCGAAGTGTTTCTTCCTCAACTTCTTCTGTACCCCAATGCATCAGATCCATTGAATGGTGATGCTGCTGCCTTGATGATGCGAGATCATGCTGCATATGAACAAAAAGTCAAAGGTAGTAATCCTTATAAAGTTTCTATAGTATAA 453 0.404 MSSPSKRRDMDLMKLMMSDYKVEMINDGMQEFFVEFHGPKDSPYQEGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNASDPLNGDAAALMMRDHAAYEQKVKGSNPYKVSIV. 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06505 150 SMART ubc_7 4 148 - -
Seca12g06505 150 Pfam Ubiquitin-conjugating enzyme 11 140 IPR000608 -
Seca12g06505 150 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Seca12g06505 150 FunFam Ubiquitin-conjugating enzyme 5, E2 1 147 - -
Seca12g06505 150 CDD UBCc 10 140 IPR000608 -
Seca12g06505 150 Gene3D Ubiquitin Conjugating Enzyme 1 145 IPR016135 -
Seca12g06505 150 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 29 136 - -
Seca12g06505 150 SUPERFAMILY UBC-like 4 140 IPR016135 -
Seca12g06505 150 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06505 Seca-Chr12 157066445 157069746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06505 3 117 Miscellaneous Gene Families AT3G17000 22.764 6.74e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06505 K10576 - gmx:100791133 279.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06505 12 157066445 157069746 Seca12g06505 12 157066445 157069746 ECH