Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06499 ATGCCACCATTTGCAGGTTCTCATCCTGATGGGTTTCAATCAAAATCCGATTCAAACATAGTCACCATCGACGTTGGTGGCAAAGTGTTCCAAACCACAAAACAGACACTAACCTCTGCAGGCCCCAAAACCTTCTTCTCCAGAATCGCCGAAGCCTCTTCCCTTTACGTTCCCTTTGTAGATAGAGACCCAGAAATTTTCTCCCTTCTTCTCTCTCTCCTCAGAACCGGTAACCTTCCCTCAAAAGCCAAAACTTTCGACCTCCAAGACCTAATTATAGAGTCCCAATTTTATGGCATAGAAAATCTCCTCATCAATTCCCTCTCCAACCCTTCTCAATTGGAACCCTTTAACCTCCAAAAATCCCTCCTTTTACCATTGAACGGAAGAGACTCCCCCTCCGCCGTCGCCACCACCCCTTACGGCTCCCTCCACATCGCACACGGCAGCAAGATCACCTCCTACGACTGGTCCCTTCGCCGGAAATCCACCATCCTCACCCACTTCACCGCCGTCGATTCTCTCCTCGCCATCTCCCCGTCGTTGGCCGCCGCCGGCGCCAACGACTTCTCCGGCCTCCAGATTCTCGATTTGGAAAAGGGGCACGTGAGGGATACCCTGCATTGGGAAAACGTGACCAAATCAGGTTCCACCGTTCAAGCCCTCGGAGCCTCGCCGGAGCACATGTTCGTAAGCTTCGAGTCTTGCCGGAGAAACTCAAATTCCATCTTGGTTTACGATTTGAACAGCCTTAGCCCCGTGACGGAGATTTGCCACAACGAGATCTACGGCGCCGACATCGATTCCGCAATTCCGGCGACAAAGTTGCAATGGGTTCAAGGCTACAACTTGTTAATGGCATCTGGGTCCCACAGTGGTCCTTCTGGGGTGTCCGGTAACGTGAGATTATGGGACGTTCGATCTGGCAACGTTGTTTGGGAGATGACAGAGAAGGTGGATTGTTTTGCTGACGTGGCAGCATCCGATGCCTTGTCTGTTATTTTCAAGGTTGGTGTGAATTCTGGGGAGGCCTTCTATGTGGATATGCGTAACTTGAGTGCTGAGAATTCATGGGTGTGTCTTGGTGACTCTAGAAAAATGCAAAATGGGAAAAAGGAAGGCTTTGGTTGCAAGGTGGAAGCACAAGGGAGTCAAGTGTTTTGTAGCAAAGGTGGGGATGTGGAGCTTTGGTCAGAGGTTATAATGGGCTCTGCTACTAACAATAGGAAAGGTAGGATCTTGAAGAAGAACTTGATGGGAAGGACAAAGGATATGGGAGGTGCTAAGATTACCAATTTGGCCTTTGGAGGAAGCAGGATGTTCTTGACTAGGAAGGATCAGCAATGTGTTGAGGTTTGGCAGGGTTCTTCCAGGGAACTTTGA 1383 0.4982 MPPFAGSHPDGFQSKSDSNIVTIDVGGKVFQTTKQTLTSAGPKTFFSRIAEASSLYVPFVDRDPEIFSLLLSLLRTGNLPSKAKTFDLQDLIIESQFYGIENLLINSLSNPSQLEPFNLQKSLLLPLNGRDSPSAVATTPYGSLHIAHGSKITSYDWSLRRKSTILTHFTAVDSLLAISPSLAAAGANDFSGLQILDLEKGHVRDTLHWENVTKSGSTVQALGASPEHMFVSFESCRRNSNSILVYDLNSLSPVTEICHNEIYGADIDSAIPATKLQWVQGYNLLMASGSHSGPSGVSGNVRLWDVRSGNVVWEMTEKVDCFADVAASDALSVIFKVGVNSGEAFYVDMRNLSAENSWVCLGDSRKMQNGKKEGFGCKVEAQGSQVFCSKGGDVELWSEVIMGSATNNRKGRILKKNLMGRTKDMGGAKITNLAFGGSRMFLTRKDQQCVEVWQGSSREL. 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06499 460 CDD BTB_POZ_KCTD-like 21 98 - -
Seca12g06499 460 Pfam BTB/POZ domain 21 107 IPR003131 GO:0051260
Seca12g06499 460 SUPERFAMILY POZ domain 18 105 IPR011333 -
Seca12g06499 460 SUPERFAMILY WD40 repeat-like 121 329 IPR036322 GO:0005515
Seca12g06499 460 Gene3D - 137 460 IPR015943 GO:0005515
Seca12g06499 460 PANTHER BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER 14 457 IPR045068 -
Seca12g06499 460 SMART BTB_4 19 115 IPR000210 GO:0005515
Seca12g06499 460 Gene3D Potassium Channel Kv1.1; Chain A 10 115 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06499 Seca-Chr12 157022753 157024135 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06499 - - tpra:123915936 774.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06499 12 157022753 157024135 Seca12g06499 12 157022753 157024135 ECH