Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06491 ATGGCTTTGCCATTTGTTACTCTTCCACGCTTTCTTTATCCTACAACTTCTACTTCCAACTCCATTACTGTAAAATCCCAACACTTTCTTCCTCTTCCTTCCACACCCTTCCTCCCTTCCCTTTCCTATCCATTCATTCGTCTTCGACCTCCCGGAGCTATTGGACCCGACGGCAAGTTCTATCCAAACCCTTCCGATGATGACCCACCGGAGGCAGCAGAGGATTCCGCCCACGGCTTCTCCAAATTCCAGCAAATCCAGCTCCAAGCCGACCGCGCCCGCCAACTCCAAGAAGAAGACTTCAAAAAGAACCAATCCACCTTCCTCGCCGCCATCGCCGACGTCGAAGACGCCCCTGACAACGCTGCCTCCTCTCTCGACACCGAGGACGATTTGTTCGGCGAGATTGACAAAGCCATCGCCCTCAAGCGCAAGGAGTTTGTGAAGCAGGGCCTTCTGGAGCCCAATCCCGCCAAACAAGAACGCACCGCCGCGGTCGCCGTCGACGACGAGCTTCAACCCGACGAGGTCGGCGACGTGGAGGAAATTGACCAGCTTCAGGGACTCGCCGTGATTTCCGACGAACCGCTGGGAGATTTCGACGGTGAAGATGGAAATCGAGGTTCGTCTTTGAAATCTGATTCTTCGTTTGACTTGGATTTTGAGACTTACGGAAAAAGCAAGGCTAGAATAGTGGAACCTAAGTTTAGGATGACTTTAGCTGAGCTTTTGGATGAGAGTAAGGTGGTGCCTGTTTCTGTGTATGGCAATCTGGAGGTTGAAATCACTGGAATTCAGCATGATTCTAGGCTTGTAACTTCTGGTAACTTGTTTGTGTGTTGTGTTGGGAGAAAAATCGATGGGCACATGTTCTTGAGTGAGGCTGATAAGAGAGGAGCGGTTGCTGTTGTGACCAGTAAAGAGATTGATATTGAGGAAACTTTGGGTTGTAAGGCTTTGGTGATTGTGGAAGATACCAATGCTGTTCTTGCTGCATTGGCTGCGTCTTTTTACAAGCACCCTTCCAAAAATATGGCTGTTATTGGGATAACTGGGACATATGGCAAAACAACCACCACCTATTTGATAAAAAGCATGTATGAAGCAATGGGCCTGCGCACCGGGATGTTCAACTCCATTGCTTGTTATGTCCATGGGGACAATCAATTGGACACACCAAACATGGAGCCAGATGCTGTTTTAGTTCAGAATTTGATGGCAAAGATGCTTCACAATGGAACCGAAGCAGTGGTCATGGAGGCAACTTCTCATGCACTGGATGAAGGGAGGTATGATGAGATTGATTATGATATTGCGGTTTTTACTAATTTGGCTGAGGAGGCAGATAGGGATGCAAAGTCAAAGCTGTTCCTGAGGATGGTAGATCCCGAGCGGCACAGGAAAGTTGTTAACATTGATGATCCAAATGCATCTTCCTTCATTTCACTAGGGAACCCAGAAGTTCCTGTTGTGACATATGCACTGGAGAATAAGAATGCGGATGTTCATCCCTTGAAGTTTGAACTGTCCTTGTTTGAGACACAGGTGTTGGTTAATACGCCCACTGGGATACTAGAAATTTCATCTGGTTTGCTTGGAAGACATAATGTTCACAACATTCTTGCTGCCGTGGCAGTTGGCATTGCTGTTGGGGCACCCTTAGAGGACATTGTTAGAGGGATTGAAGAGGTTGATGCAGTTCCTGGTAGGTGTGAATTAATTGATGAGGAACAAGCATTTGGGGTAATAGTGGACTATGCTCGAACTCCGGATGCCTTGTCTAGATTACTTGATTCTGTAAGAGAGCTTGGACCTCGCAGGATTATAACTGTTTTCGGTTGCTGTGGTGAGGATGAAAGGGGAAAGAGACCCATGATGACAAAGATAGCAACAGATAAAAGTGAAGTGACCCTGCTGACATCTGATAATCCCAAGAATGAAGATCCATGTATGTATTTTGACCATGGAATATTGGCTATAGCCTTGTTGGCAATATTATTTTTTACTCTTTATGCAGTGGATATTTTGGATGATATGTTGGCTGGGGTAGGATGGACAATGCAGGACTACCTGAAATATGGAGAGAATGACTACTACCCTCCTCTTCCAAATGGTCATAGGCTTTTTCTCCATGACATTAGGAGGGTAGCTGTCCGAGCTGCAGTTGCAATGGGAGAGGAGGGTGATGTTGTAGTGATCGCTGGCAAAGGCCATGAAACATATCATATAGAAGGTGATAGGAAGGATTTCTTTGATGATCGAGAAGAGTGCCGGGAGGCATTACAGTATGTTGACGAGCTTCACAATGCTGGAATAGATACAAGTGAATTTCCATGGCGGTTACCAGAGAGCCACTGA 2358 0.4656 MALPFVTLPRFLYPTTSTSNSITVKSQHFLPLPSTPFLPSLSYPFIRLRPPGAIGPDGKFYPNPSDDDPPEAAEDSAHGFSKFQQIQLQADRARQLQEEDFKKNQSTFLAAIADVEDAPDNAASSLDTEDDLFGEIDKAIALKRKEFVKQGLLEPNPAKQERTAAVAVDDELQPDEVGDVEEIDQLQGLAVISDEPLGDFDGEDGNRGSSLKSDSSFDLDFETYGKSKARIVEPKFRMTLAELLDESKVVPVSVYGNLEVEITGIQHDSRLVTSGNLFVCCVGRKIDGHMFLSEADKRGAVAVVTSKEIDIEETLGCKALVIVEDTNAVLAALAASFYKHPSKNMAVIGITGTYGKTTTTYLIKSMYEAMGLRTGMFNSIACYVHGDNQLDTPNMEPDAVLVQNLMAKMLHNGTEAVVMEATSHALDEGRYDEIDYDIAVFTNLAEEADRDAKSKLFLRMVDPERHRKVVNIDDPNASSFISLGNPEVPVVTYALENKNADVHPLKFELSLFETQVLVNTPTGILEISSGLLGRHNVHNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYARTPDALSRLLDSVRELGPRRIITVFGCCGEDERGKRPMMTKIATDKSEVTLLTSDNPKNEDPCMYFDHGILAIALLAILFFTLYAVDILDDMLAGVGWTMQDYLKYGENDYYPPLPNGHRLFLHDIRRVAVRAAVAMGEEGDVVVIAGKGHETYHIEGDRKDFFDDREECREALQYVDELHNAGIDTSEFPWRLPESH. 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06491 785 PANTHER MUR LIGASE FAMILY MEMBER 186 652 - -
Seca12g06491 785 Pfam Mur ligase family, glutamate ligase domain 567 649 IPR004101 GO:0009058|GO:0016881
Seca12g06491 785 NCBIfam UDP-N-acetylmuramyl-tripeptide synthetase 260 649 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Seca12g06491 785 Pfam Mur ligase middle domain 350 546 IPR013221 GO:0005524|GO:0009058|GO:0016881
Seca12g06491 785 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 567 762 IPR036615 GO:0009058|GO:0016881
Seca12g06491 785 Gene3D - 341 570 IPR036565 GO:0005524|GO:0009058
Seca12g06491 785 Gene3D - 239 339 - -
Seca12g06491 785 Pfam Mur ligase family, catalytic domain 261 338 IPR000713 GO:0009058|GO:0016881
Seca12g06491 785 SUPERFAMILY MurD-like peptide ligases, catalytic domain 341 564 IPR036565 GO:0005524|GO:0009058
Seca12g06491 785 Gene3D - 572 771 IPR036615 GO:0009058|GO:0016881
Seca12g06491 785 Hamap UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 238 761 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Seca12g06491 785 SUPERFAMILY MurE/MurF N-terminal domain 238 341 IPR035911 -
Seca12g06491 785 MobiDBLite consensus disorder prediction 54 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06491 Seca-Chr12 156949601 156954558 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06491 - - gmx:121174912 1156.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06491 12 156949601 156954558 Seca12g06491 12 156949601 156954558 ECH