Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06489 ATGGCCATGGACCCCAAAGCAGTGAAATCAGACCTTGTTCTCATCCTCGACTTTGGTTCCCAATACACTCACCTCATCACTCGCCGCATCCGAAGCCTCTCTGTTTTCTCCCTCTGTATCTCCGGCACCTCCGACCTCAAGTCCATTACCGACCTCAATCCCTCCGTCGTCATTCTCTCCGGCGGCCCCCACTCCGTCCACACCCCTAACTCCCCCTCCTTCCCCGACGGCTTCCTTCAATGGGCCCAATCCAACGGTGTCGTCATCCTCGGCATTTGCTACGGCCTCCAGCTCCTCGTCCAGCGCCTCGGCGGTGAGGTCTGCGTCGGCCACAAGCAAGAATATGGCCGCATGGAAATCAACGTCGAGCATCCCTCCGCCCTCTTCCCCTCTGAAAAAGTTGGCCATAAACAACTCGTTTGGATGAGCCACGGCGATGAAGCCACCACGCTCCCCCCTGGTTTCCATGTGGTCGCGCGTAGCCAGCAGGGCGCCGTTGCCGCCATAGAGAATCCCTCCTCCAAGTTCTATGGCCTGCAGTACCATCCTGAGGTGACTCATACGCCTGAAGGAATGGAAACACTGCGGCATTTTCTGTTTAATGTCTGTGGGGTTGAAGCAGGGTGGAAGATGGAGGATGTGATGGAGGAAGAAATTAAAGTGATTAAGGATACTGTAGGGACTGAGGAGCATGTCATTTGTGCCTTGTCTGGTGGTGTGGATTCCACTGTTGCTGCTACTCTTGTCTATAAAGCCATTGGAGATAGGCTTCATTGTGTTTTTGTTGACAATGGCTTGCTCAGGTATAAGGAGAGGGAACGTGTGATGGAAACCTTTGAAAAGGATCTTCATTTACCGGTTGTATGTGTTGATGCTTCAAATCAGTTTCTTTCAAAGCTGAAAGGTGTCACTGATCCTGAGATGAAAAGGAAAATTATTGGAAAAGAGTTTATCTGCATCTTTGATGCTTTTGCTCAGGAGCTGGAACAGAAACTAGGAAAGAAACCTGCTTACTTGGTTCAAGGGACATTGTATCCAGATGTGATTGAGTCCTGCCCACCACCTGGAAGTGGAAGAACCCATTCCCATACCATCAAGAGCCATCATAATGTTGGAGGTCTTCCAAAGGACATGAAATTGAAACTCATTGAACCACTTAAACTTCTATTCAAGGATGAGGTTCGTCAATTAGGGAGGATCTTGGAAGTTCCCGAGGGCTTTCTAAAACGCCATCCATTCCCTGGACCTGGTCTTGCAGTGAGAGTTTTGGGTGACGTGACTGAAGGAAATGCCTTAGAAATTCTCCGACAGGTTGATGAGATTTTCATTCAGTCAATCAAGGATGCTGGCCTTTATGATTCAATATGGCAAGCCTTTGCAGTTTTCTTGCCTGTACGATCTGTTGGAGTTCAAGGGGATCAAAGAACACACTCCCATGTTGTTGCTCTCAGAGCTGTTACAAGTCAAGATGGAATGACAGCAGACTGGTAA 1491 0.4909 MAMDPKAVKSDLVLILDFGSQYTHLITRRIRSLSVFSLCISGTSDLKSITDLNPSVVILSGGPHSVHTPNSPSFPDGFLQWAQSNGVVILGICYGLQLLVQRLGGEVCVGHKQEYGRMEINVEHPSALFPSEKVGHKQLVWMSHGDEATTLPPGFHVVARSQQGAVAAIENPSSKFYGLQYHPEVTHTPEGMETLRHFLFNVCGVEAGWKMEDVMEEEIKVIKDTVGTEEHVICALSGGVDSTVAATLVYKAIGDRLHCVFVDNGLLRYKERERVMETFEKDLHLPVVCVDASNQFLSKLKGVTDPEMKRKIIGKEFICIFDAFAQELEQKLGKKPAYLVQGTLYPDVIESCPPPGSGRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGRILEVPEGFLKRHPFPGPGLAVRVLGDVTEGNALEILRQVDEIFIQSIKDAGLYDSIWQAFAVFLPVRSVGVQGDQRTHSHVVALRAVTSQDGMTADW. 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06489 496 Pfam Thiamine biosynthesis protein (ThiI) 227 279 IPR020536 GO:0004810
Seca12g06489 496 PANTHER GMP SYNTHASE-RELATED 11 496 - -
Seca12g06489 496 Pfam GMP synthase C terminal domain 445 496 IPR001674 GO:0003922|GO:0005524|GO:0006164|GO:0006177
Seca12g06489 496 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 198 429 - -
Seca12g06489 496 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 12 208 - -
Seca12g06489 496 Pfam Glutamine amidotransferase class-I 15 201 IPR017926 -
Seca12g06489 496 SUPERFAMILY Class I glutamine amidotransferase-like 11 239 IPR029062 -
Seca12g06489 496 PRINTS Glutamine amidotransferase superfamily signature 88 99 - -
Seca12g06489 496 PRINTS Glutamine amidotransferase superfamily signature 57 66 - -
Seca12g06489 496 PRINTS Glutamine amidotransferase superfamily signature 178 191 - -
Seca12g06489 496 NCBIfam glutamine-hydrolyzing GMP synthase, C-terminal domain 214 496 IPR001674 GO:0003922|GO:0005524|GO:0006164|GO:0006177
Seca12g06489 496 CDD GMP_synthase_C 231 496 IPR001674 GO:0003922|GO:0005524|GO:0006164|GO:0006177
Seca12g06489 496 Gene3D - 6 206 IPR029062 -
Seca12g06489 496 ProSiteProfiles GMP synthetase ATP pyrophosphatase (GMPS ATP-PPase) domain profile. 209 410 IPR025777 GO:0003921|GO:0005524
Seca12g06489 496 CDD GATase1_GMP_Synthase 13 199 IPR004739 GO:0003922|GO:0005524|GO:0006177
Seca12g06489 496 NCBIfam glutamine-hydrolyzing GMP synthase, N-terminal domain 13 205 IPR004739 GO:0003922|GO:0005524|GO:0006177
Seca12g06489 496 Gene3D HUPs 210 415 IPR014729 -
Seca12g06489 496 FunFam GMP synthase [glutamine-hydrolyzing] 10 207 - -
Seca12g06489 496 Gene3D - 416 496 - -
Seca12g06489 496 SUPERFAMILY GMP synthetase C-terminal dimerisation domain 415 496 - -
Seca12g06489 496 PRINTS Anthranilate synthase component II signature 13 27 - -
Seca12g06489 496 PRINTS Anthranilate synthase component II signature 57 66 - -
Seca12g06489 496 PRINTS Anthranilate synthase component II signature 88 99 - -
Seca12g06489 496 PRINTS Anthranilate synthase component II signature 178 191 - -
Seca12g06489 496 FunFam GMP synthase [glutamine-hydrolyzing] 210 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06489 Seca-Chr12 156934030 156937060 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06489 K01951 - gmx:100794993 902.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06489 12 156934030 156937060 Seca12g06489 12 156934030 156937060 ECH