Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06481 ATGGTGAATCGACGCTTCACTCAGGTAGCAACCAGCGACGACGAAGACGAATCACCGCCTCGTCCGAAGCAGCAATCCACTGAAGCGAAGCAGCGCAATAGGAAGAGAATGAAGCTCCAAGAGGACGAGGAGGTCATGAACGATAAAGAGGAGGAGCAGGAGAAAGAGAACGTGAAGGAGAAGGAGGACAAGAAAACGAAGAGAAAGCTCAAAGACAAGCAAGAAGAAATGTCCGAGGAAGAAGAAGAAGAGGAAGAGGAAACGCCACAGGAGGACGCTAAACCCATTGGCGAACCAGTTAGGGTTTCTGGAAAAGGAAGAGGCAGGAGAAAGCATTTTGAGTCCTTCGAGTTCGATGGAAACGTATACACACTGGAGGACCCTGTACTTCTTGTGCCTGAGGACAAAGACCAAAAGCCGTATGTCGCAATTATTAAGGACATTACACAATCCCAAAATGGCAGCATGATGGTCACAGGGCAGTGGTTTTATCGTCCTGAAGAAGCAGAAAAAAAAGGTGGCAGCAGCTGGGTATCATGTGATACAAGGGAGCTGTTTTATAGTTTCCATCGTGATGAGGTTCCTGCAGAATCAGTTATGCATAAGTGTGTGGTGCATTTTGTTCCTAGACACAAACAACTTCCAAACCGAAAGCAACATCCCGGGTTTATCGTGCAAAGAGTGTATGACACAGTTGAAAGGAAACTCTGGAGGCTAACTGATAAGGACTATGAGGACAATAAACAGCAAGAAATTGATGAGCTTGTTCAGAAAACTCGTCAACGTTTGGGCGAACTACCTGACATTGAGACTGAAGAAGCTCCAGTTGATCGAGAAGATCTGATGAAAAATAAAAGAATCTTGAGGAAAAAGAGCATTTCACCTCTTGATGTTTCAAGGGAGGAGGAAACATCTCGAAAGAGTGACCAACCTCTGAAACCCGAAACACCATGGAGTTGTGTAAGTAATGCCTCAGAACATTATCGCATATTAGCAGATTTCAATGCACTAACAGGAGATACCTATAGAGACAAAGGTTTGGAGAAGTTGCTTCAAAGTGTTCAATTCATGTTTGATTCTGACGACAGCTTAAATAAGGAAGACAAAGGGAATGACAATTCTGATGCAATCAACAATGGAAGCAATGACAAAAGTTCAGAATTAGAAAATGAATATAAAGACAAGGTTCAGAAGAGTTCCAAGTCTTTGATCTGGCCAGATGCTGCTGTTCCAGCTGTAGTTGCTCTGGAAAAAGCTTCACATGATACTCTTTCATCAGATTCTCAGAAGTACACCCAAAAGTTACGACAATTAGTATTTAATCTCAAGAACAATGCATTGCTTGCACGCCGTCTATTAAATGGAGAGTTGGAACCTTCCAAAATATTGAATATGACACCCAGTGAATTGAAGGAGGGTTTGACTGCTGAGGAAATAACCAGGAACGAGCCTGATGAGTCACAGGACATGCAGATAACGGATGCCCGCTGCTCAATTTGTGCGGAACGTAAGGTTGGCTTGAGGGATATCATCCATGCAGGACATGTTGACCGATACAAGCTGGAATGTATTGCCTGTGGTAATTCCTGGTATGCTTCTCGTGATGCGGTGTCTGTGCTGACTATAGATGCATCAGATTCAAAAAGAAATGTAGGCACGGCACCATGGGCCACTGCGAAATTTGAAGATGTTGAGAAGAAGCTAGTGAGTCCCCGTGAATCTGAAAAGTCGGCCAATGACACATTCAAGAAAACTAGTGAAGCATATATGCCTGTTTTGGATTCCCAGAAATCATTTGGCAAGTCCAGGAAGGATGAAAACGCTGAAGCTTCAAGGCATGCTGACTAG 1848 0.4378 MVNRRFTQVATSDDEDESPPRPKQQSTEAKQRNRKRMKLQEDEEVMNDKEEEQEKENVKEKEDKKTKRKLKDKQEEMSEEEEEEEEETPQEDAKPIGEPVRVSGKGRGRRKHFESFEFDGNVYTLEDPVLLVPEDKDQKPYVAIIKDITQSQNGSMMVTGQWFYRPEEAEKKGGSSWVSCDTRELFYSFHRDEVPAESVMHKCVVHFVPRHKQLPNRKQHPGFIVQRVYDTVERKLWRLTDKDYEDNKQQEIDELVQKTRQRLGELPDIETEEAPVDREDLMKNKRILRKKSISPLDVSREEETSRKSDQPLKPETPWSCVSNASEHYRILADFNALTGDTYRDKGLEKLLQSVQFMFDSDDSLNKEDKGNDNSDAINNGSNDKSSELENEYKDKVQKSSKSLIWPDAAVPAVVALEKASHDTLSSDSQKYTQKLRQLVFNLKNNALLARRLLNGELEPSKILNMTPSELKEGLTAEEITRNEPDESQDMQITDARCSICAERKVGLRDIIHAGHVDRYKLECIACGNSWYASRDAVSVLTIDASDSKRNVGTAPWATAKFEDVEKKLVSPRESEKSANDTFKKTSEAYMPVLDSQKSFGKSRKDENAEASRHAD. 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06481 615 MobiDBLite consensus disorder prediction 295 319 - -
Seca12g06481 615 Gene3D - 377 472 IPR036575 GO:0006351
Seca12g06481 615 CDD BAH_plant_3 103 249 - -
Seca12g06481 615 SMART BAH_4 121 240 IPR001025 GO:0003682
Seca12g06481 615 SMART mid_6 375 480 IPR003618 GO:0006351
Seca12g06481 615 MobiDBLite consensus disorder prediction 77 91 - -
Seca12g06481 615 MobiDBLite consensus disorder prediction 51 76 - -
Seca12g06481 615 MobiDBLite consensus disorder prediction 295 310 - -
Seca12g06481 615 MobiDBLite consensus disorder prediction 567 615 - -
Seca12g06481 615 Gene3D - 103 328 IPR043151 -
Seca12g06481 615 Pfam Transcription factor S-II (TFIIS), central domain 338 489 IPR003618 GO:0006351
Seca12g06481 615 SUPERFAMILY Elongation factor TFIIS domain 2 405 471 IPR036575 GO:0006351
Seca12g06481 615 MobiDBLite consensus disorder prediction 9 44 - -
Seca12g06481 615 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 610 - -
Seca12g06481 615 MobiDBLite consensus disorder prediction 1 107 - -
Seca12g06481 615 Coils Coil 32 87 - -
Seca12g06481 615 Pfam BAH domain 122 236 IPR001025 GO:0003682
Seca12g06481 615 ProSiteProfiles BAH domain profile. 121 240 IPR001025 GO:0003682
Seca12g06481 615 ProSiteProfiles TFIIS central domain profile. 342 498 IPR003618 GO:0006351
Seca12g06481 615 MobiDBLite consensus disorder prediction 598 615 - -
Seca12g06481 615 MobiDBLite consensus disorder prediction 362 388 - -
Seca12g06481 615 MobiDBLite consensus disorder prediction 567 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06481 Seca-Chr12 156865266 156870831 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06481 - - gmx:100787670 926.006
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06481 12 156865266 156870831 Seca12g06481 12 156865266 156870831 ECH
Seca12g06481 12 156865266 156870831 Seca12g06481 12 156865266 156870831 PCT