Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06480 ATGATTGAATCAATTGCTACAACTTCACTCCTTGGTCACCGTCCTGTCTGTGGAGGAAATTTAATAAGGGATGCATCTGGTAAACGCAAATCTTTGAACACTTGTAGGTTCCCAGCAACAGAGTTTCTTGGTGGAAGGGTTGTTGTTTCTCTGCCTTTGCCTAAATCCAAACATGATAGCTACCTATCTTCATCATCAATTAAGGCCTTGGCTGTGGAGCTCACAAGAGAGGCATATTCTTATAGGGAAGAAAGATTGCCTAAGAAAGATAACAACAAGATTGATAGTGGCTTTGATCCAAGACCTGGTTTGTGGCCTCCACCAAATAGAGCAGATAACCCTTCCCTTCAGAATCCCTTGCTTAGACAAGAGAGGATGGGATGTGGCTGGTTGGGCGCTATATTTGAGTGGGAAGGGGTTCTCATTGAGGACAACCCTGATCTAGAGAAGCAAGCTTGGCTAGCCCTCTCTCAAGAAGAAGGAAAACCCTCTCCTCCTGCTTTCATCCTTAAGAGAATAGAAGGCATGAAGAATGAACAGGCAATTTCTGAAGTGCTTTGCTGGTCAAGAGATCCAGCACAGTTAAGAAGAATGGCTAATAGAAAGGAAGAAATCTACCAAGCTTTGCAGGGTGGGATATATAGTCTTATGCCAGGGTCCAAAGAGTTTGTGAGTGTTTTGATGCATTATAAGATACCAATGGCATTGGTTTCCACTCGTCCTAGAAAAACTCTTGAGACTGCTATAGGGCAAATTGGTATTGGAGACAATTTCAGTGTTATTGTGGCAGCAGAGGATGTTTACAGGGGAAAGCCTGATCCAGAAATGTTTGTGTATGCAGCACAGCTTTTAAACTTCATACCTGAGAGGTGCATTGTGTTTGGTAACTCAAATCAAACAGTGGAGGCTGCACATGATGCAAGGATGAAGTGTGTAGCTGTTGCTAGCAAGCATCCTGTGTATGAGCTGGGGGCTGCAGACTTAGTTGTCAGGCGCCTAGATGAGCTTTCAGTGGTTGATTTGAAGAATCTGGCAGATATTGAATCAGCTGAATTTGGGTCTGGGGAGCCTGAGCTGGAGCTGGAGCTGGAGCTGGAACAAGATTATGATACATCACCTCTTGATGACAATTTCTGGTAA 1140 0.4404 MIESIATTSLLGHRPVCGGNLIRDASGKRKSLNTCRFPATEFLGGRVVVSLPLPKSKHDSYLSSSSIKALAVELTREAYSYREERLPKKDNNKIDSGFDPRPGLWPPPNRADNPSLQNPLLRQERMGCGWLGAIFEWEGVLIEDNPDLEKQAWLALSQEEGKPSPPAFILKRIEGMKNEQAISEVLCWSRDPAQLRRMANRKEEIYQALQGGIYSLMPGSKEFVSVLMHYKIPMALVSTRPRKTLETAIGQIGIGDNFSVIVAAEDVYRGKPDPEMFVYAAQLLNFIPERCIVFGNSNQTVEAAHDARMKCVAVASKHPVYELGAADLVVRRLDELSVVDLKNLADIESAEFGSGEPELELELELEQDYDTSPLDDNFW. 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06480 379 PANTHER 5-AMINO-6-(5-PHOSPHO-D-RIBITYLAMINO)URACIL PHOSPHATASE, CHLOROPLASTIC 2 379 - -
Seca12g06480 379 CDD HAD_BPGM-like 193 316 - -
Seca12g06480 379 SUPERFAMILY HAD-like 133 336 IPR036412 -
Seca12g06480 379 NCBIfam HAD-IA family hydrolase 202 314 IPR006439 -
Seca12g06480 379 Gene3D Putative phosphatase; domain 2 143 216 IPR023198 -
Seca12g06480 379 Pfam Haloacid dehalogenase-like hydrolase 148 314 IPR041492 -
Seca12g06480 379 Gene3D - 133 331 IPR023214 -
Seca12g06480 379 MobiDBLite consensus disorder prediction 90 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06480 Seca-Chr12 156855209 156857449 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06480 K22912 - gmx:100798181 613.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06480 12 156855209 156857449 Seca12g06480 12 156855209 156857449 ECH