Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06479 ATGACTGTCATTTCCCGAGTCGCTTCCTCACCGCACACCATAATACGGCATAACTTGGATGGCTCCCATGTTAGGAAAACCTCTTCATGGGTTTCGCAGAAGAGGATTGTTGCTGCTGGCGTTGGGTGTAGACGAGGCCGTAGGGTGATTGTTGCTGCGAGCCCTCCCACTGAAGATGCTGTGGTTGCAACTGACCCACTTACAAAGCAGGACCTTATTGATTATCTTGCTTCTGGTTGTAAGTCCAAGGAGAAATGGAGAATAGGTACTGAACATGAGAAGTTTGGTTTTGAGTTTGGAAGCTTGCGTCCTATGAAGTATGAGCAAATAGCAGAATTGCTGAATGGCATTGCCGAGAGATTTGACTGGGACAAAATAATGGAAGGTGATAAAATTATTGGACTTAAACAGGGGAAGCAGAGCATATCATTGGAGCCAGGTGGTCAGTTTGAACTTAGTGGAGCCCCTCTTGAAACCTTGCATCAAACCTGTGCAGAAGTTAATTCGCACCTGTATCAGGTTAAAGCTGTTGCTGAGGAAATGGGAATTGGATTTTTGGGGATTGGTTTCCAGCCAAAGTGGGGACTCAAAGACATACCTATAATGCCAAAGGGAAGATATGAAATCATGAGGAATTACATGCCCAAAGTTGGTTCACTTGGGCTTGACATGATGTTCAGGACATGCACTGTACAGGTCAATCTGGACTTTAGTTCTGAAGCTGACATGATCAGGAAATTTCGTGCTGGCCTAGCTTTGCAGCCTATAGCAACAGCCCTTTTTGCCAATTCACCTTTCACAGAGGGCAAGCCTAATGGTTTTGTCAGTATGAGAAGCCATATTTGGACTGATACTGATAAGGACCGCACAGGAATGCTGCCCTTTGTTTTTGATGACTCCTTCGGGTTTGAGCAGTACGTTGATTATGCTCTTGATGTTCCAATGTATTTTGTCTATCGGAAACAGAAATATATCGACTGTACTGGAATGACCTTCAGGGTTCCCATCTATCTTTGA 1017 0.4454 MTVISRVASSPHTIIRHNLDGSHVRKTSSWVSQKRIVAAGVGCRRGRRVIVAASPPTEDAVVATDPLTKQDLIDYLASGCKSKEKWRIGTEHEKFGFEFGSLRPMKYEQIAELLNGIAERFDWDKIMEGDKIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPIMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGFVSMRSHIWTDTDKDRTGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKQKYIDCTGMTFRVPIYL. 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06479 338 SUPERFAMILY Glutamine synthetase/guanido kinase 78 320 IPR014746 GO:0003824
Seca12g06479 338 Gene3D - 52 337 - -
Seca12g06479 338 PANTHER GLUTAMATE--CYSTEINE LIGASE, CHLOROPLASTIC 34 333 IPR035434 GO:0004357|GO:0006750
Seca12g06479 338 Pfam Glutamate-cysteine ligase family 2(GCS2) 118 326 IPR006336 GO:0004357|GO:0042398
Seca12g06479 338 NCBIfam glutamate--cysteine ligase 66 334 IPR011556 GO:0004357|GO:0006750
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06479 Seca-Chr12 156830413 156840192 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06479 K01919 - gmx:547545 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06479 12 156830413 156840192 Seca12g06479 12 156830413 156840192 ECH
Seca12g06479 12 156830413 156840192 Seca12g06479 12 156830413 156840192 PCT