Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06466 ATGGAAGAGGAGAACCAAATAAGAAAGGGAAAATATGCTGCTGATATTTCCTCCATAAAGGAAGCACATGCCCGAATAAAACCATTGGTTCTTAAAACTCCAGTTCTGTCTTCCAGCTCTCTGAATGCTCTATCAGGAAGGCAGCTCTACTTTAAGTGTGAATGTTTCCAAAAGGGTGGAGCTTTTAAATTTAGAGGTGCCTGCAATGCTGTTTTCTCTCTCAATGATGAGGATGCTTCTAAAGGGGTTATAACACACAGCAGTGGAAACCATGCTGCAGCTTTGGCGTTGGCAGCAAAACTAAGGGGGATCCCTGCATATATTGTTATTCCAAAAAATGCACCAACTTGCAAAATTGAGAATGTAAAGCGGTATGGTGGTCAGGCTATCTGGTCTGAGGCCTCTATGAGATCAAGGGAGGAAACTGCAAATAAAGTGTGGCAAGAAACTGGTGCTATCTTTATACATCCATATAATGATGGGCGCATATTGAGTGGCCAGGGTACCATATCCTTAGAGCTTCTGGAACAAGCCCCACAAATAGATACACTAGTGGTACCCATAAGTGGTTTGTTTTCACTTTTTTCTGTCAATCTGTCAGCCAAAATGTTTAAAATTTTGATTATTTTCTCAGTTCTAAACAAATTGAAAACTCCAGGTGGTGGTTTGATATCTGGAATAGCATTGGCTGCCAAGTCCATCAACCCTGCTATTCGTATTTTGGCTGCTGAACCTAAAGGGGCTGATGATGCAGCACAATCTAAAGCAGCTGGGAGGATAATAACATTGCCTGAGACCAATACTATAGCTGATGGGCTTCGAGCATTTCTTGGAGATTTCACATGGCCTGTAGTACGAGATCTTGTTGAGGACATAATAACAGTGGAAGACAGTGAAATAATAAAAGCCATGAAACTGTGTTTTGAAGTTCTTAAGATTGTAGCAGAACCAAGTGGAGCAATTGGCCTTGCTGCTGTTCTATCAGATACTTTCCAGAAAAATCCTGCTTGGAAGGATAGCAAACATATAGGAATAGTAGTTTCAGGAGGCAATGTTGATCTAGCCGTGCTTTGGGATTCTTTGAACAAAGGAAAATGA 1098 0.4117 MEEENQIRKGKYAADISSIKEAHARIKPLVLKTPVLSSSSLNALSGRQLYFKCECFQKGGAFKFRGACNAVFSLNDEDASKGVITHSSGNHAAALALAAKLRGIPAYIVIPKNAPTCKIENVKRYGGQAIWSEASMRSREETANKVWQETGAIFIHPYNDGRILSGQGTISLELLEQAPQIDTLVVPISGLFSLFSVNLSAKMFKILIIFSVLNKLKTPGGGLISGIALAAKSINPAIRILAAEPKGADDAAQSKAAGRIITLPETNTIADGLRAFLGDFTWPVVRDLVEDIITVEDSEIIKAMKLCFEVLKIVAEPSGAIGLAAVLSDTFQKNPAWKDSKHIGIVVSGGNVDLAVLWDSLNKGK. 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06466 365 CDD Thr-dehyd 16 353 - -
Seca12g06466 365 Gene3D - 2 134 IPR036052 -
Seca12g06466 365 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 54 67 IPR000634 GO:0006520|GO:0030170
Seca12g06466 365 Gene3D - 135 364 IPR036052 -
Seca12g06466 365 PANTHER SERINE / THREONINE RACEMASE FAMILY MEMBER 5 356 - -
Seca12g06466 365 FunFam Threonine dehydratase catabolic 62 158 - -
Seca12g06466 365 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 22 351 IPR036052 -
Seca12g06466 365 Pfam Pyridoxal-phosphate dependent enzyme 219 349 IPR001926 -
Seca12g06466 365 Pfam Pyridoxal-phosphate dependent enzyme 28 190 IPR001926 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06466 Seca-Chr12 156715714 156718899 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06466 K12235 - gmx:100799758 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06466 12 156715714 156718899 Seca12g06466 12 156715714 156718899 ECH