Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06464 ATGGAGGAAGCTCCAGTTCCAGTTTCAAGCGCAGCACCGGTGGCATCATGCTGGAGCAGCGTGGTGAAGAAGGAGGCGCCTCAACAACAAGAGTCCCTTCAGTTACAGACCGAGCGAGTGTTGGAAGACACCCGCAATGGCATCTCAGTCGCCATCATCGACGCCAATGCCGTCATCGAAGCCGGCGACAAGCTTCACGGCTTCGCCGACAAGTTCGTCACCGTCCCTGAAGTTATGCAGGAAATTCGTGACCCCGTCTCACGCCACAAGCTCTCTTTCCTTCCCTTCACTATCCAAACCATGGAGCCCTCCCCTGAATCAATCAACAAAGTTATCAAATTCGCTAGGGCTACTGGTGACCTACAGACTCTTTCAGATGTTGATCTCAAACTCATAGCTCTAACTTATACTTTGGAGGCTCAGATTCACGGCACAAAACATCTTAGGGACAGCCCGCCTCCTGTACAAATGGTAAATGTGAAGAGGTTACCTGAGAAGGACATGCCCGGATGGGGTTCAAATGTGCCTAATTTGCAAGAGTGGGAGGCATTAGAACGTGAAACCGAGGACCAGCCAAATTCCAATTCAAGAATCCTTCCTTTGCAAGACTTGAATTTGAACATTGGTCCTCAAGATGAACAATCTGTGGATGGTTCAGTGGAGCATACAGATGAAACTCCTTTGGAAATGCAAGAGGGTGGTGAGTGTGGTTCAAGAAAGCCTAAGAAATATCTACCTAAGAAAAAGGAGATAAACATTGAAGGGAAGATAATGGTGGCTGATGGAATTGATGCATCGCAAGGACAATTTGATGACAATGCTGGTGATTGGATGCCTGCTGTCAGTCGGAGTACTCATAGGAGATATCTTAGAAGGAAAGCGAGACGAGAGACTTATGAGGCATTATCCCACAATCAAGATCAGCAGGATGTGGAAGAAAACATTGATAGTAGTGTTAGTGAAGATGCCAGAGCTTCAAATCAGCTTGTTCATCATAGTGATGAAGAAAAACATGTTGAAAATGTTGTTTCCAAGGATGATCAGATAATAGAAGAGAACAAAGACAATGATAATCTCTCTGCAACTCTGAAGCAAATGAGTCTTGCAGAAGGTTCACTTGAAGTTCTTGATGAAGAACACAAATTAAGTTTGTCTCCTGAAGAACTCCAGTCAAACAATGCTGGACTGCTGGACAGTACCGACGGCAATGCAGCTATGGCCACTAAATCATGTGAAACAGATACAGTCAGTGACCAATCAGATCACTTGGAGATTGCAAGCCAGACCAGCGAAGCTGCTGATTTTTCATATGCAGATGATGATGGTAGTGAGCAAAGTTGGATGATTAGATCATTGTCTGAATCAAGTGTAGCCTGTATAACTGGTGACTTCGCAATGCAAAATGTTCTTCTCCAAATGGGCTTGCGCTTGCTGGCTCCTGGAGGAGCACAGATACACCAGCTGCACAGATGGATACTTAAGTGTCATGCCTGCTACACTGTTACTGCTGAAATTGGGAGGATTTTCTGTCCAAAATGTGGAAATGGTGGCACCTTAAGGAAGGTAGCTGTCACTGTTAATGAAAATGGAATAATGTTAGCAGCCCGTCGACCTCGAGTTACATTACGTGGCACCAAGTTCTCATTGCCTTTACCCCAAGGTGGCAGGGATGCAGTCACTAAGAACCTTATTCTCCGTGAAGATCAACTTCCTCAGAGGGTACTTTATCCTAAAACGAAGAAGAAAGCCAACAAGCAGGTTTGTGTGTGTTTAAACTTTAAACTACTTATATGA 1794 0.4498 MEEAPVPVSSAAPVASCWSSVVKKEAPQQQESLQLQTERVLEDTRNGISVAIIDANAVIEAGDKLHGFADKFVTVPEVMQEIRDPVSRHKLSFLPFTIQTMEPSPESINKVIKFARATGDLQTLSDVDLKLIALTYTLEAQIHGTKHLRDSPPPVQMVNVKRLPEKDMPGWGSNVPNLQEWEALERETEDQPNSNSRILPLQDLNLNIGPQDEQSVDGSVEHTDETPLEMQEGGECGSRKPKKYLPKKKEINIEGKIMVADGIDASQGQFDDNAGDWMPAVSRSTHRRYLRRKARRETYEALSHNQDQQDVEENIDSSVSEDARASNQLVHHSDEEKHVENVVSKDDQIIEENKDNDNLSATLKQMSLAEGSLEVLDEEHKLSLSPEELQSNNAGLLDSTDGNAAMATKSCETDTVSDQSDHLEIASQTSEAADFSYADDDGSEQSWMIRSLSESSVACITGDFAMQNVLLQMGLRLLAPGGAQIHQLHRWILKCHACYTVTAEIGRIFCPKCGNGGTLRKVAVTVNENGIMLAARRPRVTLRGTKFSLPLPQGGRDAVTKNLILREDQLPQRVLYPKTKKKANKQVCVCLNFKLLI. 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06464 597 CDD PIN_Nob1-like 52 163 IPR033411 -
Seca12g06464 597 Pfam Nin one binding (NOB1) Zn-ribbon like 485 555 IPR014881 -
Seca12g06464 597 Gene3D - 41 152 - -
Seca12g06464 597 Gene3D - 479 553 IPR036283 -
Seca12g06464 597 Pfam PIN domain of ribonuclease 52 138 IPR033411 -
Seca12g06464 597 PIRSF Nob1 34 589 IPR017117 GO:0000469|GO:0004521|GO:0042274
Seca12g06464 597 FunFam 20S-pre-rRNA D-site endonuclease NOB1 42 162 - -
Seca12g06464 597 PANTHER RNA-BINDING PROTEIN NOB1 42 585 IPR039907 -
Seca12g06464 597 MobiDBLite consensus disorder prediction 300 337 - -
Seca12g06464 597 SUPERFAMILY NOB1 zinc finger-like 485 548 IPR036283 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06464 Seca-Chr12 156708113 156711475 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06464 K11883 - gmx:100800291 878.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06464 12 156708113 156711475 Seca12g06464 12 156708113 156711475 ECH