Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06424 ATGGACCTTATTCATAAGTTCCTGAACATATTAGCTCCCCCAATCACCTTTTTTTCCCTTTGCCTTTTCTTACCACCCTATTGGACTTTCAAGTTCTTTCTTTCCACCTTTAATTCCATCTTCCGTGAAAATGTTGCGGGTAAAGTTGTTCACATCACAGGTGCTTCCTCTGGTATTGGCGAGTATTTGGCATACGAGTATGCTAAGAGAGGTGCTCGATTAGCACTTTCTGCCAGGAGGGAGAATGCATTACAGGAAGTTGCTGATAGAGCGCGTGATTATGGATCTCCTGATGTTATCATAATGCGTGCAGATGTTTCTAAGGTTGAAGATTGTAGCCGATTGGTGGATGAAACTGTTACCCATTTTGGAAGACTGGACCATCTGGTAAACAATGCTGCAATTGGCACTTCAACCTTGTTTGAACAAGTACCTGATATCACCAATTTGAGACCTATCATGGAAACAAACTTTTGGGGATCAGTTTACACAACCCATTTTGCTTTACCTCACCTCAGAAACAGCAGAGGAAAAATCGTGGTCATGTCATCTGCTGATTCTTGGATGCCTGCACCCAGAAGGAACGTCTATAATGCAAGCAAAGCAGCATTAGTGAGTCTTTATGAAACATTGAGAGTGGAAGTTGGATCTGAAATAGGCATAACAATTGTAACACCCGGTTACATAGAATCTGAATTGACCAAAGGGAAGTTCTTATTGGCAGAAGGCAACATGGGCGTGGACCAAGATTTGAGAGATGTTGAAGTGAGCGCAGTGGCAGTGGGGTCAGTGAGTGGGTGTGCCAAAGCGATAGTTAATAGCACATTGAGGGGAGATAGGTACCTGACAGTACCAGCATGGTTCAGAATGAGTTATGTGCTCAAAGTGTTGTGCCCAGAGGTGGTGGAGTGGAGCTTCAGAATGCTGTATCTAAGCAGTCCAGGAAAGGAAGCCCCTAGCAAAAAGATTTTGGACGCAAGTGGACTCAAGAAGTTGTTTTATCCCTCTTCAATTCAATCTCCTGAGGTCAAGACTGACTGA 1041 0.4371 MDLIHKFLNILAPPITFFSLCLFLPPYWTFKFFLSTFNSIFRENVAGKVVHITGASSGIGEYLAYEYAKRGARLALSARRENALQEVADRARDYGSPDVIIMRADVSKVEDCSRLVDETVTHFGRLDHLVNNAAIGTSTLFEQVPDITNLRPIMETNFWGSVYTTHFALPHLRNSRGKIVVMSSADSWMPAPRRNVYNASKAALVSLYETLRVEVGSEIGITIVTPGYIESELTKGKFLLAEGNMGVDQDLRDVEVSAVAVGSVSGCAKAIVNSTLRGDRYLTVPAWFRMSYVLKVLCPEVVEWSFRMLYLSSPGKEAPSKKILDASGLKKLFYPSSIQSPEVKTD. 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06424 346 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 184 212 IPR020904 GO:0016491
Seca12g06424 346 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 135 IPR002347 -
Seca12g06424 346 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 197 216 IPR002347 -
Seca12g06424 346 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 177 185 IPR002347 -
Seca12g06424 346 PRINTS Glucose/ribitol dehydrogenase family signature 217 234 IPR002347 -
Seca12g06424 346 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Seca12g06424 346 PRINTS Glucose/ribitol dehydrogenase family signature 124 135 IPR002347 -
Seca12g06424 346 PRINTS Glucose/ribitol dehydrogenase family signature 197 216 IPR002347 -
Seca12g06424 346 PRINTS Glucose/ribitol dehydrogenase family signature 171 187 IPR002347 -
Seca12g06424 346 Gene3D - 35 312 - -
Seca12g06424 346 PANTHER RETINOL DEHYDROGENASE-RELATED 46 318 - -
Seca12g06424 346 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 44 310 IPR036291 -
Seca12g06424 346 Pfam short chain dehydrogenase 48 236 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06424 Seca-Chr12 156299367 156301197 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06424 43 234 Acyl Lipid Metabolism Gene Families AT1G24360 30.256 7.96e-18 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06424 K22418 - egr:104416667 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06424 12 156299367 156301197 Seca12g06424 12 156299367 156301197 ECH