Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06423 ATGGTTGCAATTTACAAGATACTGAATGTAGTACTGCCCCCATTGTCACTGATTCTGCTCCCCATCTTCATGATACCTTTTCTTTTCTTCAAGCTGTTTATTTATGTCGAAAAGTTAGTGTACACCGAAAATTTGGCAAGGAAAGTAGTACTAGTCACTGGAGCTGCCTCAGGGATTGGCGAGCAAATAGCTTATGAGTATGCAAGGCGAGGAGCAATGTTGTCTTTGGTTGACATTAGAAAGGAGAATCTTGTAGCAGTGTCTGATAAAGCACGTTCTCTGGGTTCCCCTGATGTTACCATCATTGGTGCTGATGTGTCTAAGCTCCAAGACTGCAAGCGCTTTGTTGATGAAACGGTGAACCACTTTGGACGACTGGATCATCTGGTAAATAATGCTGGAATTCTTAGGGCTGCAAAGGTGGAGGATTTGCATGATGTTTCTGAATTCACTCCAACTATGGACATAAATTTTTGGGGAGCGGTTTATGGCACTTTATATGCAATCCCACATCTGAAAAACAGCAAAGGCAAGATCATAGTGATTGCTTCAGCTTGTGGCTGGTTCCCAACTCCAACGCTGAGTATCTATAATGCAAGCAAAGCAGCGGTCATAAGCTTCTTTGAGACACTGAGAATTGAAGTTGGTTGGTGTATTGGCATAACAATCGTCACGCCCGGTTTTTTGAAAACGGAGCTCGCATTCAGGGCCATTGAAAATGAGGCTATTCTGGGAAGAATTCCAATGGGGTCAGCATTTGAATGTGCAAAAGCCATAGTGAAAAGCGCATGTCGTGGAGATATGTACGTCACAAACCCTTCCTGGACCAAAGTGGTGTTTCCGTGGAAGCTGCTTTATCCTCAACTCATAGATTGGGTTCTGCCCCCATTATCACTGATTCTGCTCCCCGCCTTCATGATACCTTTTCTTTTCTTCAAGATGCTTATTTATGTAAAAAAGTTGGTGTACAATGAAGATTTGGCAAGGAAAGTAGTACTAATCACTGGAGCTGCCTCAGGGATTGGCGAGCAAATAGCTTATGAGTATGCAAGGCGAGGAGCAATGTTGTCTCTGGTTGACATTAGAAAGGAAAATCTTGTAGCAGTGTCTGATAAAGCACGTTCTCTGGGTTCCCCTGATGTTACCATCATTGGTGCTGATGTGTCCAAGCCCCAAGACTGCAATCGCTTTGTTGATGAAACGGTGAACCACTTTGGACGACTAGATCATCTGGTAAATAATGCTGGAGTTGGTAGGGGGGCAAAGGTGGAGGATTTGCATCATGTTTCTGAGTTCACTCCAATTATGGACACAAATTTTTGGGGAGCAGTTTATGGCACTTTATATGCAATCCCACATCTCAAAAACAGCAAAGGCAAGATCATTGAGATTGCTTCTGCTTGTGGTTGGTTCCCACTTCCGACACTGAGTATCTATAATGCAAGCAAGGCAGCAGTCATAAACTTCTTTGAGACTCTTAGAATTGAAGTTGGTGGGTCTATTGGCATAACAATCGCCACGCCTGGTTTTGTGAAAACGGACATGGCATTGAGGGCCATTGAAAATGAGGCTAGTCTGGGAAGACTTCCAATGGGGTCAGCATTTGAATGTGCAAAAACCATAGTGAAAAGCGCATGTCGTGGAGATAGCGCTACCAGGCGTCCAAATCCTAAAAATGCTACGTGTTACTTCCTCTCCATGCAGAAGGCCAACGTTGCAGAGCTTGACACCTTGTCCTCTCCTAGGCTATTGAAATACAATGATCTTGCCTTTGTCTTCTCAATCTTTCCCCCTCTAGGCCTGGTTCTGCTGCTATGCATTTTACCACCTTATCTGTTATTCAAGACTCTCTACTTCGTTGTAAGATCAATGTTTAGTGAGAACGTAGCAGGAAAAGTAATACTAATCACTGGAGCTTCCTCTGGCATAGGCGAGCATCTAGCATATGAGTATGGCAGAAGAGGAGCGCGTTTAGCTCTTGTTGCTAGAAGAGAGAATCGACTCAAGGAGGTCGCTACTAATGCCAAGTCCCTTGGATCCCCTGATGTCATCACCATTCCTGCAGATGTATCAATTGTCCAAGATTGCAAACGATTCGTTGACTTAACAGTCAACCACTTTGGTCAATTGGATCATCTGGTGAATAACGCAGGAATAGTTCCTCTCTGCTTGTTTGAACATGCCACTGATATCACTAATTTTAAGCCTGCAATGGACATTAACTTTTGGGGTTCTGCATACGGCACTTATTTTTCAATCCCTCACCTCAGAAAAAGCAGAGGTAAGATTGTAGCCATAGCTTCCTCTGCTGGATGGTTGCCTGCGCCAAGAATGATGTTCTACAATGCGAGCAAAGCAGCAGTGATCAGCTTTTATGAGACTCTGAGAACTGAATTGGGAAGGGACATAGGAATAACTATAGTCACTCCAGGGTTGATTGAATCAGAAATGACCCAAGGGAAGTTCCTATCCAAGGAAGGCCGAATGGTTCTTGACCAAGAAATGAGAGATGTTCAAGTTAGTTTGATGCCCATAAGATCAGTCACAGAAGCTGCCGAAGCAATAGTGAAAAGTGCTTGCCGTGGAGACTCGTTCTTGACAGAACCAGCATGGATTAAGACGACGTTCTATTTGAAGATATTTTGCCCTGAAGTATTAGAGTTTTCTAACCGCTGGCTGCTAATCTCAGGGTCTTCAGAGAGGGATACAATTAGCAAGAAGCTGATTGATCTAACACGCTTAAAGAAATATCTGTATCCTGAGTCAGTCAGAAATCCCAAGCTCAAGCCCAACTAA 2796 0.4374 MVAIYKILNVVLPPLSLILLPIFMIPFLFFKLFIYVEKLVYTENLARKVVLVTGAASGIGEQIAYEYARRGAMLSLVDIRKENLVAVSDKARSLGSPDVTIIGADVSKLQDCKRFVDETVNHFGRLDHLVNNAGILRAAKVEDLHDVSEFTPTMDINFWGAVYGTLYAIPHLKNSKGKIIVIASACGWFPTPTLSIYNASKAAVISFFETLRIEVGWCIGITIVTPGFLKTELAFRAIENEAILGRIPMGSAFECAKAIVKSACRGDMYVTNPSWTKVVFPWKLLYPQLIDWVLPPLSLILLPAFMIPFLFFKMLIYVKKLVYNEDLARKVVLITGAASGIGEQIAYEYARRGAMLSLVDIRKENLVAVSDKARSLGSPDVTIIGADVSKPQDCNRFVDETVNHFGRLDHLVNNAGVGRGAKVEDLHHVSEFTPIMDTNFWGAVYGTLYAIPHLKNSKGKIIEIASACGWFPLPTLSIYNASKAAVINFFETLRIEVGGSIGITIATPGFVKTDMALRAIENEASLGRLPMGSAFECAKTIVKSACRGDSATRRPNPKNATCYFLSMQKANVAELDTLSSPRLLKYNDLAFVFSIFPPLGLVLLLCILPPYLLFKTLYFVVRSMFSENVAGKVILITGASSGIGEHLAYEYGRRGARLALVARRENRLKEVATNAKSLGSPDVITIPADVSIVQDCKRFVDLTVNHFGQLDHLVNNAGIVPLCLFEHATDITNFKPAMDINFWGSAYGTYFSIPHLRKSRGKIVAIASSAGWLPAPRMMFYNASKAAVISFYETLRTELGRDIGITIVTPGLIESEMTQGKFLSKEGRMVLDQEMRDVQVSLMPIRSVTEAAEAIVKSACRGDSFLTEPAWIKTTFYLKIFCPEVLEFSNRWLLISGSSERDTISKKLIDLTRLKKYLYPESVRNPKLKPN. 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06423 931 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 324 550 IPR036291 -
Seca12g06423 931 FunFam Short-chain dehydrogenase reductase 319 551 - -
Seca12g06423 931 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 42 295 IPR036291 -
Seca12g06423 931 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 184 212 IPR020904 GO:0016491
Seca12g06423 931 PANTHER RETINOL DEHYDROGENASE-RELATED 630 896 - -
Seca12g06423 931 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 459 467 IPR002347 -
Seca12g06423 931 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 406 417 IPR002347 -
Seca12g06423 931 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 781 800 IPR002347 -
Seca12g06423 931 PRINTS Glucose/ribitol dehydrogenase family signature 708 719 IPR002347 -
Seca12g06423 931 PRINTS Glucose/ribitol dehydrogenase family signature 781 800 IPR002347 -
Seca12g06423 931 PRINTS Glucose/ribitol dehydrogenase family signature 633 650 IPR002347 -
Seca12g06423 931 PRINTS Glucose/ribitol dehydrogenase family signature 801 818 IPR002347 -
Seca12g06423 931 PRINTS Glucose/ribitol dehydrogenase family signature 755 771 IPR002347 -
Seca12g06423 931 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 466 494 IPR020904 GO:0016491
Seca12g06423 931 FunFam Short-chain dehydrogenase reductase 623 873 - -
Seca12g06423 931 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 768 796 IPR020904 GO:0016491
Seca12g06423 931 Gene3D - 35 297 - -
Seca12g06423 931 Gene3D - 315 579 - -
Seca12g06423 931 Gene3D - 620 894 - -
Seca12g06423 931 FunFam Short-chain dehydrogenase reductase 38 277 - -
Seca12g06423 931 Pfam short chain dehydrogenase 48 236 IPR002347 -
Seca12g06423 931 Pfam short chain dehydrogenase 632 821 IPR002347 -
Seca12g06423 931 Pfam short chain dehydrogenase 330 519 IPR002347 -
Seca12g06423 931 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 625 889 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06423 Seca-Chr12 156287705 156296798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06423 585 818 Acyl Lipid Metabolism Gene Families AT1G24360 29.388 1.06e-18 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06423 K22418 - gmx:100787835 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06423 12 156287705 156296798 Seca12g06423 12 156287705 156296798 ECH