Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06422 ATGCACATACGCCGTCTCGTGCTCGACTCCGACGACGACGAACAACAAGACGCCGTTCAGCAACAGCCACAGTCAGTTACGCATCAACCTCCAAACCCTACCGATTTTCCCCCGGACGCCGTTGAAATCTCTGACGACGACTTCATCGACGTTCCCGATGACCTCTCGCCGCCATCTCCTCCGCCGGCGCCGGTTCCCGAACCTCAGGCTCCCGCCTGTCCCGTCAGCGGTTTTCTTTGCCGCCTTGGGTTGCGCTTGAAGAGAGACTGGCTGGCTGCTTGTCTTCGCGAACTCCACGGCTCCGTAAGGGGATTCGAAGGGTTCGATGTCGCCACAAAGGCCAAACTCTGTTTCGAGCAATTTCTCTTCGCTGATATGAACCACTGTGGAAGCGGCGTGCTTCCTCCCAATGTGGATTCCATGCATCAAGTTGTTCTCTCTGGTCCCTATGTATTGCAGGTTGATGAAATAATCAATATCAGCTGTCCTCTACGAGGCAGGTATCAAGCAGCTCCTCCTGGAATTAAAAGGTGCCTCAAGTTGTCAATGACTGATGGAGTTCAGAGAGTCTTTGGAATGGAGTACAGGCCCATTCAAGCACTTGAAGTTTGTGCACCTGCTGGTTTAAAGGTTGCCATCTCTAATGTACATGTGCGTCGTGGACTTTTGGTGCTGGTCCCTGAAACCATTGAAATTTTGGGGGGATTAGTTGAGCAGCTGGATGCAGCACGAAAGCGGCTGGTTGATGAATTGAATAAGCCACCTAGGGGAAAAAGAACCAAAAATGGAGTGCTTCCTCCTTTAGCAACTAGAGCAACTCTTGCTGCATGGCCTTCAAGTGGAGTTGATGATCTTGGGCAGAATGGCTCCACGTTGCATAATACTGATTCTGTCCAGGCAAATAATCAAGGTGCTGGTCTTAGCATGTCTGGCACTCGTAACAGCTTAACAACTGATGATACTTTGTTTATGGGTGCACAAAATGCTGCTTCCAATTCAGCACCCCAAGCGGTTTCAAACACCGAGGCCATGAATATTGATATGCGGAGAGGTACCAATCCTGTGTCCCGTGCTAGTTCTATGGCTAACCAATTTTCTTCTATTGTTTCAAAAGCTGAGGAGATGCATATAGATACTGCTAATGTCAGCAGGGGAACTTCAGTTGGCAACCAATCTTCTCATATGCACTCAAATGTTGCAGTGGCACAAAAAGACACTGTTCATGTAACAAGAGAAACTTCTGTGGCTACTATGTGCTCTCCTGTTGCTGAAAACGTTGAGACAGACAGGGATAGAATTCCTGTAATCACAGATAATGCTCCTTTGAGAGGATCCTCCTCCCGTGTTTCAAACAATGACGATATCCTGATGGTTGATGCTAGTGATCATTTACTCATACTGTCTGGAGACCGAGAAGTTCCTTTCACATACTTAGCTAGCTTGTCAGCCAAGTGGGCTGCAATGAAGGAGAAAGCTCCTCGGGTTCAGGGTAAAATTAAGTGCTTTTTGACCGGTGTAAAAGGATTCCAGTATAAGAAAAGGACAACATACGAGCTTCAGGCTTATGTAGATGATGGTAGCCTTATTTCTGAAATCCTCATTGATCATGATGTTGTACAGGAAGGAATTGGTTATTCTCCCGAGGAGGTCACTGCGGCTCTTTCTTCTCCTGACACGAAAGTAGTCCACAACATGAAGGAGACCATGCGTAAATTCCAAGTTTTTTTAGCAAACTTTGAGGTAATACGAATCTTTCTCTATATAGACATGATAGAATCTGACAGATTCCTGCAAGTTGTATGCATATGCAGTTGTTAG 1818 0.4681 MHIRRLVLDSDDDEQQDAVQQQPQSVTHQPPNPTDFPPDAVEISDDDFIDVPDDLSPPSPPPAPVPEPQAPACPVSGFLCRLGLRLKRDWLAACLRELHGSVRGFEGFDVATKAKLCFEQFLFADMNHCGSGVLPPNVDSMHQVVLSGPYVLQVDEIINISCPLRGRYQAAPPGIKRCLKLSMTDGVQRVFGMEYRPIQALEVCAPAGLKVAISNVHVRRGLLVLVPETIEILGGLVEQLDAARKRLVDELNKPPRGKRTKNGVLPPLATRATLAAWPSSGVDDLGQNGSTLHNTDSVQANNQGAGLSMSGTRNSLTTDDTLFMGAQNAASNSAPQAVSNTEAMNIDMRRGTNPVSRASSMANQFSSIVSKAEEMHIDTANVSRGTSVGNQSSHMHSNVAVAQKDTVHVTRETSVATMCSPVAENVETDRDRIPVITDNAPLRGSSSRVSNNDDILMVDASDHLLILSGDREVPFTYLASLSAKWAAMKEKAPRVQGKIKCFLTGVKGFQYKKRTTYELQAYVDDGSLISEILIDHDVVQEGIGYSPEEVTAALSSPDTKVVHNMKETMRKFQVFLANFEVIRIFLYIDMIESDRFLQVVCICSC. 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06422 605 MobiDBLite consensus disorder prediction 1 69 - -
Seca12g06422 605 SMART DUF1767_2 76 169 IPR033472 -
Seca12g06422 605 FunFam RecQ-mediated instability protein (DUF1767) 125 251 - -
Seca12g06422 605 Gene3D - 125 251 IPR042470 -
Seca12g06422 605 Pfam Recq-mediated genome instability protein 1, C-terminal OB-fold 474 581 IPR032199 GO:0000166
Seca12g06422 605 MobiDBLite consensus disorder prediction 290 309 - -
Seca12g06422 605 PANTHER RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 RMI1 71 582 - -
Seca12g06422 605 MobiDBLite consensus disorder prediction 54 69 - -
Seca12g06422 605 Pfam RecQ mediated genome instability protein 83 170 IPR013894 -
Seca12g06422 605 Pfam RecQ mediated genome instability protein 175 246 IPR013894 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06422 Seca-Chr12 156282785 156287264 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06422 K10990 - qsu:112001742 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06422 12 156282785 156287264 Seca12g06422 12 156282785 156287264 ECH