Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06382 ATGGGCAACTGCTGCTCCGACGTCGCCGGAGGCCGTGCGGCCATCGGCGGCACCGCCGGCGGTCTCCTCAACCCTGCCGATTCTCCCAACGATGCCGTTGATAACTTCCTCAGGTCTCGCGGTTACCACGGCCTCTTCTCTCAGATCGAGTTGTCGTTTTCTGCTTCTGGCTTGCGTGATCGGGATGTGCTTTCCAAGAGTGATCCAATGATGGTTCTTTATGCAAAAGGAAAAAATGGAGCACTTGAGGAACTTGGCCGGACAGAAGTAATTCTGAATTCATTGAATCCTACATGGATTACCAAACACACTCTCATTTATCATTTTGAGGTTGTTCAGGTTTTAGTGTTTCGTGTGTATGATGTTGATACTCAGTTTCACAATGCAGATGTAAAGATGCTTAAGCTAGAAGAGCAGCAATTTCTAGGTGAGGCAACCTGTGCATTATCTGAGATAATTACAAAGCCTGATCGGTCATTGACATTAGATTTACACAGAGAAGATACTATCAGATCTAGCCACTCCCAAAACTGTGGGAAGCTCTTGGTGCATGCTGAGGAATGTGTTAACTCAAAGACTACAGTAGAGATGATACTCAGGTGTTCAGACTTGGAATATAGGGATCTCTTTTCAAAAAGTGATCCCTTTTTATTGGTATCCAAAGTTGTGGAAGGTGGTACCAATATTCCGATTTGCAAAACAGAAGTTATAAAGAATGATCACAACCCAACATGGAAGCCATTGTTCTTGAATATTCAACAAATAGGAAGCAAGGAAAGTCCTTTGATAATAGAGTGCTATAACTTTAATAGCAATGGCAAACATGATTTGATGGGAAAAGTGCAGAGATCTTTGGTGGAGTTGGAGAAGCTTTATTCTGGTGGCCAAGGAGAAAGTTTATTTTTGCCTGCTACTGTGGGTCATAATTCTCATAACAAGGTGTTAAAGAGTCGACTATTTGTGGACAAATTTGCTGAAAGTGTTCAATATACTTTCCTGGACTACTTGGGTGGGGGATTTGAATTGAACTTCATGGTTGCCATTGATTTTACAGGTATCCCATATAACTTATTATACCTAATTCTTTTCTGGACTGCAATAGGTATCTTCATCAGTGTTCTGAGTTATGTATGGGATGACAAGGATGCTATGCATTTTTATGGACTAACCTCCTCTTGTTTACCAGCTTCAAATGGAAATCCACGACTTCCAGATTCTTTACATTATATTGATCCTTCAGGACGGCCAAATGCATACCAGAGGGCAATTGTTGAGGTTGGGGAGGTATTACAGTTTTATGATTCAGACAAGCGATTTCCTACATGGGGATTTGGAGCACGACCAATTGACGGTCCTGTCTCCCATTGTTTCAACTTGAATGGAAGCAGTCATTACTGTGAGGTGGAAGGTATCCAAGGAATAATGATGGCATACACAAGTGCCCTGCTCAACGTTTCTCTTGCAGGACCAACTCTTTTTGGACCTGTCATAAGCAATGCTGCACTGATTGCCAGCCAATCTGTAGCAAATGGTGGAAGAAAGTACTTTGTTTTGTTAATAATCACAGATGGAGTAGTGACGGATCTCCAAGAAACAAAAGATGCTCTCGTTAAAGCATCTGACCTGCCATTATCAATCCTTATTGTTGGTGTAGGAGGGGCTGATTTCAAAGAAATGGAGATTTTGGATGCAGACAAAGGAGACAGGCTTGAAAGTTCTTCTGGACGCGTTGCTTCGCGTGATATAGTCCAGTTTGTTCCATTTCGGGATGTTCAAAGTGGTGAAATTTCGGTAGTTCAATCACTTCTAGCAGAATTACCTACTCAATTTTTAGCTTACGTGCGAAGCAGAAATATCCAACCAACTCCCTAG 1872 0.4215 MGNCCSDVAGGRAAIGGTAGGLLNPADSPNDAVDNFLRSRGYHGLFSQIELSFSASGLRDRDVLSKSDPMMVLYAKGKNGALEELGRTEVILNSLNPTWITKHTLIYHFEVVQVLVFRVYDVDTQFHNADVKMLKLEEQQFLGEATCALSEIITKPDRSLTLDLHREDTIRSSHSQNCGKLLVHAEECVNSKTTVEMILRCSDLEYRDLFSKSDPFLLVSKVVEGGTNIPICKTEVIKNDHNPTWKPLFLNIQQIGSKESPLIIECYNFNSNGKHDLMGKVQRSLVELEKLYSGGQGESLFLPATVGHNSHNKVLKSRLFVDKFAESVQYTFLDYLGGGFELNFMVAIDFTGIPYNLLYLILFWTAIGIFISVLSYVWDDKDAMHFYGLTSSCLPASNGNPRLPDSLHYIDPSGRPNAYQRAIVEVGEVLQFYDSDKRFPTWGFGARPIDGPVSHCFNLNGSSHYCEVEGIQGIMMAYTSALLNVSLAGPTLFGPVISNAALIASQSVANGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEILDADKGDRLESSSGRVASRDIVQFVPFRDVQSGEISVVQSLLAELPTQFLAYVRSRNIQPTP. 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06382 623 PANTHER COPINE 34 622 IPR045052 GO:0005544
Seca12g06382 623 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 176 288 IPR035892 -
Seca12g06382 623 Gene3D C2 domain 52 194 IPR035892 -
Seca12g06382 623 Pfam C2 domain 198 289 IPR000008 -
Seca12g06382 623 Pfam C2 domain 54 155 IPR000008 -
Seca12g06382 623 CDD vWA_copine_like 312 610 IPR010734 -
Seca12g06382 623 SMART C2_3c 48 161 IPR000008 -
Seca12g06382 623 SMART C2_3c 198 300 IPR000008 -
Seca12g06382 623 Pfam Copine 406 621 IPR010734 -
Seca12g06382 623 SUPERFAMILY vWA-like 415 568 IPR036465 -
Seca12g06382 623 ProSiteProfiles C2 domain profile. 28 162 IPR000008 -
Seca12g06382 623 ProSiteProfiles C2 domain profile. 177 302 IPR000008 -
Seca12g06382 623 CDD C2A_Copine 47 164 - -
Seca12g06382 623 CDD C2B_Copine 195 290 IPR037768 -
Seca12g06382 623 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 53 166 IPR035892 -
Seca12g06382 623 FunFam Protein BONZAI 1 isoform A 195 314 - -
Seca12g06382 623 FunFam Protein BONZAI 1 51 194 - -
Seca12g06382 623 Gene3D C2 domain 195 313 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06382 Seca-Chr12 155804656 155817609 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06382 - - gmx:100807801 1028.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06382 12 155804656 155817609 Seca12g06382 12 155804656 155817609 ECH
Seca12g06382 12 155804656 155817609 Seca12g06382 12 155804656 155817609 PCT