Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06365 ATGGCAGGATCTTCTGCAGATCTTCATCTTGAAACTGATATACAACTCATTGGTGCCATCAACAGCACCATGATAACCTCTTCTGAGTCCAAAGTTGGCACTGATGTTGGACACAGCAGTGTCATTAAATCCCATAATGGAGAAGAAGGAGGAGGAGAAGGACACTTCGTTGAGGTCACCATGGATATTCAAGGTAACTCTGTTGCCTTACACAGTGTCAAAACTGTTGCAGGTGGTGACATGGGAGAAGGTGAGAAACTGGGTTTGACCGGCAAAAAGCTTGAGAAGAAAACCTCCTTTGGTGCCTCTGTTGTGCAGAATGCTACCATTCGCATGAAGCAGTTGAAACGTTTGGCATCATTTTCCAAACCTGAACCCGGAAAACAATTGGAAAGGACAAAGTCTGCAGTGGCTCATGCTCTCACTGGACTCAAGTTTATCAGCAAAACCGATGGTGGTGCAGGGTGGAGTGAAGTTGAGAAGGAGTTTGACAAGCTCACAGCTTCCACTGATGGGTATCTTCCTCGTGCTCTCTTTGCCAAATGCATAGGATTGAACAAGGAGTCTGAGGCTTATGCAGAGAAGCTGTTTGACACTCTTGCTCGGCAGAGAGGTATTCAAGGGGGTTCCATTAACAAGATCCAATTGAGGGAATTCTGGGACCGTATTTCTGACCAGAGTTTTGATTCTAGGCTCAAAACATTCTTTGACATGGTTGATAAAGATGCAGATGGCAGAATCAACGAGGAAGAAATTAAAGAGATTATATGCCTTAGTGCCACTGCCAACCAACTGTCAAACATCCAGAAACAAGCAGAGGAATATGCAGCTTTGATCATGGAAGAACTAGACCCTGATAACACAGGATATATCTTGATAGACAACCTGGAGACACTCTTATTACATGGACCAGATCAAACTACAAGAGGAGAAAGCAAGTACCTGAGCCAAATGCTAAGCCAAAAGCTTAAGCCTACACTTGTGGACAGTCCTATTGAGAGGTGGTGTAGAGATACCAAATACTTCTTGCAGGACAATTGGCGAAGAGTTTGGGTAATTGCACTGTGGATTGGTGTGATGTTAGGTCTATTTGCCTATAAATTTGTGCAATATAGGAGAAGGGCTGTCTATGAGGTGATGGGCCATTGTGTATGCATGGCAAAAGGTGCTGCTGAGACACTTAAATTGAATATGGCTCTTATCTTGTTGCCTGTTTGCCGAAATACAATCACCTGGCTCAGGAATAAGACCAAGCTATGCGTTGCAGTTCCTTTTGATGATAATCTCAACTTCCATAAGGTGATAGCAGTGGCAGTAGGAATTGGTGTTGGTATACATGCTATTTATCATCTTACTTGTGATTTTCCTCGCCTTCTTCATGCAAGCGATGAGAAGTACAAGCTCATGAAGCCTTTTTTTGGAGATAGACCATCAAATTATTGGTTCTTTGTCAAATCATGGGAAGGAGTAACGGGGATTATAATGGTTGTGCTAATGGCAATAGCTTTTACGCTGGCCAATCCCAGGTTCAGGAGAGGCCGTGCCAAACTACCCAAACCTTTCAACAAACTCACAGGTTTCAATGCCTTCTGGTATTCCCATCACCTCTTCATCATTGTCTATGCCCTGTTGGTTGTGCATGGAATCAAACTTTACTTGACCAAGCATTGGTACAAAAAAACGACCTGGATGTATTTGGCTATTCCCATCACCATTTATGCATTGGAAAGACTGACTAGAGCACTTAGATCAAGTATCAAGTCAGTGAGAATATTAAAGGTGGCTGTTTATCCCGGAAATGTGTTAGCACTTCAAATGTCAAAGCCTCCAGGGTTTAACTACAAGAGTGGACAGTACATGTTTGTCAATTGTGCTGCTGTATCTCCATTTGAATGGCATCCATTTTCTATAACTTCCGCCCCTGATGATGAGTACCTTAGTGTTCACATTAAAATAGTTGGTGATTGGACTCGAAGTATGAAAGCCAAATTCTCAGAGGCGTGCCTGCCAGCCCTCAATGGGCAGAGTGGACTTCTAAGAGCTGAATGCATGAAAGGAGATAACAGCCTAAGTACTTTTCCTAAAGTTCTGGTTGATGGTCCTTATGGAGCCCCAGCACAAGACTACAGGCAGTATGAGGTGGTTTTGCTTGTGGGGCTTGGAATAGGAGCTACCCCAATGATAAGTATACTAAAAGACATGGTCAATAATTTCAAGGCCATGGAAGAAGATGAGTGGTCCACAATAGAGCAAAATAGCGCCAGGTTCAGTGATTTCAAGACAAGGAGAGCATACTTCTACTGGGTGACAAGAGAGCAGGGTTCCTTTGACTGGTTTAAAGGGGTGATGAACGAGGTGGCCGAAGAGGACAGAAGGGGTGTTATTGAGCTACACAGCTACTGCACCAGCGTCTATGAAGAGGGTGATGCTCGTTCTGCTCTTATTGCTATGGTGCAGTCTATAAACCATGCAAAGAATGGCGTGGACATCGTCTCTGGTACACGCGTCAGGTCTCACTTTGCCAAACCCGATTGGCGCAGTGTCTACAAGCGCATTGCGCTTAATCATCCACATGCTCGAGTTGGGGTATTTTACTGTGGGCCACCGACCCTCGTCCAAGGACTTCGTCAGCTAGCATCGGATTTCTCTCACAACACATCCACCAAATACGATTTCCATAAAGAAAATTTCTGA 2694 0.4417 MAGSSADLHLETDIQLIGAINSTMITSSESKVGTDVGHSSVIKSHNGEEGGGEGHFVEVTMDIQGNSVALHSVKTVAGGDMGEGEKLGLTGKKLEKKTSFGASVVQNATIRMKQLKRLASFSKPEPGKQLERTKSAVAHALTGLKFISKTDGGAGWSEVEKEFDKLTASTDGYLPRALFAKCIGLNKESEAYAEKLFDTLARQRGIQGGSINKIQLREFWDRISDQSFDSRLKTFFDMVDKDADGRINEEEIKEIICLSATANQLSNIQKQAEEYAALIMEELDPDNTGYILIDNLETLLLHGPDQTTRGESKYLSQMLSQKLKPTLVDSPIERWCRDTKYFLQDNWRRVWVIALWIGVMLGLFAYKFVQYRRRAVYEVMGHCVCMAKGAAETLKLNMALILLPVCRNTITWLRNKTKLCVAVPFDDNLNFHKVIAVAVGIGVGIHAIYHLTCDFPRLLHASDEKYKLMKPFFGDRPSNYWFFVKSWEGVTGIIMVVLMAIAFTLANPRFRRGRAKLPKPFNKLTGFNAFWYSHHLFIIVYALLVVHGIKLYLTKHWYKKTTWMYLAIPITIYALERLTRALRSSIKSVRILKVAVYPGNVLALQMSKPPGFNYKSGQYMFVNCAAVSPFEWHPFSITSAPDDEYLSVHIKIVGDWTRSMKAKFSEACLPALNGQSGLLRAECMKGDNSLSTFPKVLVDGPYGAPAQDYRQYEVVLLVGLGIGATPMISILKDMVNNFKAMEEDEWSTIEQNSARFSDFKTRRAYFYWVTREQGSFDWFKGVMNEVAEEDRRGVIELHSYCTSVYEEGDARSALIAMVQSINHAKNGVDIVSGTRVRSHFAKPDWRSVYKRIALNHPHARVGVFYCGPPTLVQGLRQLASDFSHNTSTKYDFHKENF. 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06365 897 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 579 708 IPR017927 GO:0016491
Seca12g06365 897 Gene3D - 703 897 IPR039261 -
Seca12g06365 897 FunFam Respiratory burst oxidase homolog A 575 667 - -
Seca12g06365 897 Gene3D - 130 248 - -
Seca12g06365 897 Pfam FAD-binding domain 587 705 IPR013112 GO:0016491
Seca12g06365 897 Pfam Ferric reductase like transmembrane component 389 545 IPR013130 -
Seca12g06365 897 FunFam Respiratory burst oxidase protein A 703 897 - -
Seca12g06365 897 FunFam Respiratory burst oxidase homolog A 130 248 - -
Seca12g06365 897 SFLD NADPH oxidase subgroup (NOX) 112 897 - -
Seca12g06365 897 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 710 897 IPR039261 -
Seca12g06365 897 Gene3D Translation factors 574 668 - -
Seca12g06365 897 Pfam Ferric reductase NAD binding domain 712 879 IPR013121 GO:0016491
Seca12g06365 897 SUPERFAMILY EF-hand 157 305 IPR011992 -
Seca12g06365 897 ProSitePatterns EF-hand calcium-binding domain. 240 252 IPR018247 -
Seca12g06365 897 SUPERFAMILY Riboflavin synthase domain-like 588 705 IPR017938 -
Seca12g06365 897 CDD NOX_Duox_like_FAD_NADP 591 839 - -
Seca12g06365 897 ProSiteProfiles EF-hand calcium-binding domain profile. 227 262 IPR002048 GO:0005509
Seca12g06365 897 PANTHER NADPH OXIDASE 192 897 - -
Seca12g06365 897 Pfam Respiratory burst NADPH oxidase 129 230 IPR013623 GO:0004601|GO:0050664
Seca12g06365 897 PRINTS Cytochrome B-245 heavy chain signature 694 707 IPR000778 GO:0016020|GO:0016491
Seca12g06365 897 PRINTS Cytochrome B-245 heavy chain signature 527 547 IPR000778 GO:0016020|GO:0016491
Seca12g06365 897 PRINTS Cytochrome B-245 heavy chain signature 435 453 IPR000778 GO:0016020|GO:0016491
Seca12g06365 897 PRINTS Cytochrome B-245 heavy chain signature 717 734 IPR000778 GO:0016020|GO:0016491
Seca12g06365 897 SFLD Ferric reductase subgroup (FRE) 334 897 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06365 Seca-Chr12 155650064 155656785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06365 56 897 Miscellaneous Gene Families AT5G51060 64.494 0.0 1150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06365 K13447 - gmx:100808271 1489.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06365 12 155650064 155656785 Seca12g06365 12 155650064 155656785 ECH