Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06276 ATGAAGGGTGGAACGGTTCAGATAAGCTGGCACGAGAGCAAACCCGTCTTAACCCTCGATTTCCACCCTCTCTCCGCCACTCTCGCCACCGCCGGCGCTGATTTCGAAATCAAGTTTTGGTCAATAAAACCATCAGGAGCACAGAAGAAGCTTCCCGTAGTTTCCTATGTCGATAACCTGACTTACCATAATTCCGCAGTAAATGTCATTCGCTTCTCTCCTTCCGGGGAACTGCTAGCCTCTGGTGCTGATGGTGCGATCTTGATCCCTACTATTGAATGTGATTATCGTTTTTTTTTCTTGAGTTAG 309 0.4757 MKGGTVQISWHESKPVLTLDFHPLSATLATAGADFEIKFWSIKPSGAQKKLPVVSYVDNLTYHNSAVNVIRFSPSGELLASGADGAILIPTIECDYRFFFLS. 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06276 102 Pfam WD domain, G-beta repeat 10 41 IPR001680 GO:0005515
Seca12g06276 102 Pfam WD domain, G-beta repeat 60 89 IPR001680 GO:0005515
Seca12g06276 102 SUPERFAMILY WD40 repeat-like 11 88 IPR036322 GO:0005515
Seca12g06276 102 SMART WD40_4 3 41 IPR001680 GO:0005515
Seca12g06276 102 SMART WD40_4 53 90 IPR001680 GO:0005515
Seca12g06276 102 Gene3D - 3 95 IPR015943 GO:0005515
Seca12g06276 102 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 50 IPR001680 GO:0005515
Seca12g06276 102 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 89 IPR045145 GO:0006335
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06276 8 88 Miscellaneous Gene Families AT5G08390 27.160 2.61e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06276 K10751 - gmx:100784411 157.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06276 12 154649177 154650304 Seca12g06276 12 154649177 154650304 ECH