Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06260 ATGGATGTAGAGCTGAAGGATGCGAAGGTTGCTTACCGGAACGCCAAGAATGAAGGTAACCACCGGGAGGAGGCGCGGTGGGCCAACGTCATCGGCGACATACTCAAGAACAGAGGCGAATACGTGGAAGCTCTCAAGTGGCTTCGAGTCGATTACGAAGTTTCGCTCAAGCACTTGCCTGAAAAGCACTTGCTCCCAACTTGTCAATCCCTCGGCGAGATGTATCTCCGTCTCGAAGAATTCACCGATGCCCTAATTTACCAGAAGAAGCATTTAGAGCTTGCAAGGGACGCTAACGACGTCGTTGAACAGCAGAGAGCAAGCACGCAACTCGGTCGCACTTATCACGAACTCTTCTCGAGATCGGATCACGACCATAACTCCATACGCAATGCGAAGAAGTATTTCAAGAGCGCAATGGAACTCGCGGTGACTCTGAAGGAGAATCCGCCGAATAACAAGTCTTCGTTCCTGAAAGAATACATTGATGCACACAACAACATAGGCATGCTGGAGATGGATCTTGATAACTTGCACGAGGCGAAGACGATTCTAACTAGAGGATTGGAGATTTGTGATGAAGAGGAGATCAGTGAATTTGATGATGGACGCAGCAGGCTCCACCATAACCTTGGCAATGTGTATATGGAACTAAGGATGTGGGATGAAGCTAGAAAAAATATTAAGAGGGACATTCAGATTTGTAACAGAATTGGACATATACAAGGGGAAGCCAAGGGGTATATTAATCTTGGTGAAATGCATTACAGGAATCAGAAGTATGATGAAGCGCGGTCTTCTTATGAGAAGGCACTTTCCTTGGCAAAGTCCTTGGAGGATGAGGATGCTTTGGTCAAGCAAATTGAACAGAATATTGAAACTGTGAGAGAAGCTGTTAAAGTAATGGATGAAATCAAGAGAGAAAAGCAGAAACTCAAGAAGCTCAAAAGGGATATAACCAATGCTAGAGGGACACCATATGAGCGCAAATGTTTGCTGCAGCAAAGTGCGTCTCTTGATCGCCTTGTTGAGAAAGCAAGGATGATCTCTGCGTGGGAGAAGTATTGTGAATTTGCAAAGGAGAAGAAGAAAATAGCAAATGAACTTTGTGACAGGCAAAGGCTGGGAGATTCATATCTGGATATTGGAGAATCATATCAGAAGCTCAGAAATTTCAACAAAGCAATCAAATGGTACAAAAAGAGTTGGGAAATGTACAAAACAATCAGTAACTTGGAGGGGCAAGCACTGGTGAAAATTAATATCGGTAATGTTTTGGATTCTACTCAAAATTGGAGAGAAGCGTTGGATGCATTTCAAGATAGCTACAGGATTGCTGTTGAAGCGGGCCTCCCTGATGTACAGCTTTCTGCCTTGGAAAATATGCATTATAGCAACATGATCAGATTTGATGATGAGAATGAGACCAGGAGGTTGAAACTTCTAATTGATAAGCTAAAAAAGTCAAAAGAAGAAGAGTCTGAAGATAGATGTATGCCAGAGGATTGTTGCTCTGAGACTGACACTGAAGCAGATGAGCATCTGTCAAATAGTGGGTCTGATGATTTCTGCTCTCCAAAGAGAATGTCTAGATCAAAAACTCAGACTACTGGAGAAGAATTGAAAGATGATATGCCTCTTATGTCACTATATCAGTCCATAAAAGGCTCTTCCAAAAAGATAACAGGCCATAAGGAAAGTGTTACCAACTCTACCAAGCAAGCTGAGCAGTCATCCAAAAGTTTTACAAATATAACCAGCAACCATCAGACGGTTGTTGGTCGTAAACGTGTCCGTGTAATTCTTTCTGACGACGACGATGATGATGAGATGGAGTGTTCAAGCAGAAAGGATCATGATTGCCTGTTAGAGGACTTGCCCACTCATGATGGAGTTAAGAATAAAGTCAGTCCTCATAAAATTCAGGTTGTCTCAGAGTATGGATCCAAATGTGCAATTAATGTGGAAGAAAGTAGTAGTTCTTTGAAATGCTGGAGTCCACGTACAGCCACTAAAATTGGCAGACACTCTGCCTCTTTGAGCAATGATATAGTTGCTGAACCTGATTTTCCTAGTTGTTCTAAATGTGACACAGATGTCTCTGGCAAACAAAATGATGTTGCCCATCCCATGTTACATCATTCCCAAAATGACCAATGTATTACATGTCAGATAGGGGATAAACAAATTCGCGTAGATACAACCTTGTGCACTGCTGATGATCAGTTGAATATTGACTCGTTAAAGGCTGTAGTTGCATGCTTATACTATCTACAATTTCCCACAGAAAAGAGATCAGAAGGTTTGTTGCCCGTTATTCAGCACATAAAATGTGCTGGAAGAGATCTAGAATCCATGGAAACTATTGAAAAGCTCAAGGAACATATGGGAAATGACATTGTTGAAGCTTCCATTGATGGATGGATTCACAAGCGTCTAATAAAAATGTATGTAGACTGTTGCAAGGAGTTATCTGAGGTACCAAATATGAAAGTGCTGAAAAAACTTTACAATTTAGAGGTTTCAGATGATGAAATCATTGTGTCTGACTGCGACCTGCAAGATTTGTCTATAACACCATTGATAAATGCACTGCAATCCCAAAATTCATTTGCAATGCTTGACATTTCTCACAATTTGTTAGGAAATGGGACAATGGAGAAACTTCAAAAGGTGCTCACAGCATCAGGCCAATCTTATGGCGACCTAACTCTGGATTTGCATTGCAATCGATTTGGCCCAACAGCTCTGTTTCAGATTTGTGAATGCTCAATGCTATTTGGTCGACTGGAAGTGCTTAACATTTCTGGAAACCGTCTTACTGATGCATGTGGATCTTATCTTTCAACAATATTAAAAAACTGTACAGGTGAGCTGCATGACCTGAAGCTCTGCCAATTTGAATATGGTTTCTGTCATCTCTTGAGGAATGCTGATCACCTTGTCTTTCTGCTCACCCTTTTCTAG 2967 0.4162 MDVELKDAKVAYRNAKNEGNHREEARWANVIGDILKNRGEYVEALKWLRVDYEVSLKHLPEKHLLPTCQSLGEMYLRLEEFTDALIYQKKHLELARDANDVVEQQRASTQLGRTYHELFSRSDHDHNSIRNAKKYFKSAMELAVTLKENPPNNKSSFLKEYIDAHNNIGMLEMDLDNLHEAKTILTRGLEICDEEEISEFDDGRSRLHHNLGNVYMELRMWDEARKNIKRDIQICNRIGHIQGEAKGYINLGEMHYRNQKYDEARSSYEKALSLAKSLEDEDALVKQIEQNIETVREAVKVMDEIKREKQKLKKLKRDITNARGTPYERKCLLQQSASLDRLVEKARMISAWEKYCEFAKEKKKIANELCDRQRLGDSYLDIGESYQKLRNFNKAIKWYKKSWEMYKTISNLEGQALVKINIGNVLDSTQNWREALDAFQDSYRIAVEAGLPDVQLSALENMHYSNMIRFDDENETRRLKLLIDKLKKSKEEESEDRCMPEDCCSETDTEADEHLSNSGSDDFCSPKRMSRSKTQTTGEELKDDMPLMSLYQSIKGSSKKITGHKESVTNSTKQAEQSSKSFTNITSNHQTVVGRKRVRVILSDDDDDDEMECSSRKDHDCLLEDLPTHDGVKNKVSPHKIQVVSEYGSKCAINVEESSSSLKCWSPRTATKIGRHSASLSNDIVAEPDFPSCSKCDTDVSGKQNDVAHPMLHHSQNDQCITCQIGDKQIRVDTTLCTADDQLNIDSLKAVVACLYYLQFPTEKRSEGLLPVIQHIKCAGRDLESMETIEKLKEHMGNDIVEASIDGWIHKRLIKMYVDCCKELSEVPNMKVLKKLYNLEVSDDEIIVSDCDLQDLSITPLINALQSQNSFAMLDISHNLLGNGTMEKLQKVLTASGQSYGDLTLDLHCNRFGPTALFQICECSMLFGRLEVLNISGNRLTDACGSYLSTILKNCTGELHDLKLCQFEYGFCHLLRNADHLVFLLTLF. 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06260 988 Pfam Tetratricopeptide repeat 378 446 - -
Seca12g06260 988 Pfam Tetratricopeptide repeat 205 277 - -
Seca12g06260 988 SMART tpr_5 245 278 IPR019734 GO:0005515
Seca12g06260 988 SMART tpr_5 65 98 IPR019734 GO:0005515
Seca12g06260 988 SMART tpr_5 162 195 IPR019734 GO:0005515
Seca12g06260 988 SMART tpr_5 376 409 IPR019734 GO:0005515
Seca12g06260 988 SMART tpr_5 205 238 IPR019734 GO:0005515
Seca12g06260 988 SMART tpr_5 416 449 IPR019734 GO:0005515
Seca12g06260 988 Coils Coil 261 325 - -
Seca12g06260 988 PANTHER PROTEIN TONSOKU 2 957 IPR044227 GO:0005634|GO:0006325|GO:0009933|GO:0040029|GO:0072423
Seca12g06260 988 SUPERFAMILY TPR-like 13 150 IPR011990 GO:0005515
Seca12g06260 988 FunFam Protein TONSOKU 1 154 - -
Seca12g06260 988 MobiDBLite consensus disorder prediction 561 581 - -
Seca12g06260 988 SUPERFAMILY RNI-like 840 965 - -
Seca12g06260 988 SUPERFAMILY TPR-like 161 445 IPR011990 GO:0005515
Seca12g06260 988 MobiDBLite consensus disorder prediction 518 532 - -
Seca12g06260 988 ProSiteProfiles TPR repeat profile. 245 278 IPR019734 GO:0005515
Seca12g06260 988 Gene3D Tetratricopeptide repeat domain 4 312 IPR011990 GO:0005515
Seca12g06260 988 Gene3D Tetratricopeptide repeat domain 313 469 IPR011990 GO:0005515
Seca12g06260 988 MobiDBLite consensus disorder prediction 490 517 - -
Seca12g06260 988 Gene3D Ribonuclease Inhibitor 777 979 IPR032675 -
Seca12g06260 988 ProSiteProfiles TPR repeat profile. 376 409 IPR019734 GO:0005515
Seca12g06260 988 ProSiteProfiles TPR repeat region circular profile. 245 274 - -
Seca12g06260 988 MobiDBLite consensus disorder prediction 490 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06260 Seca-Chr12 154430459 154439504 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06260 - - aprc:113856161 1577.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06260 12 154430459 154439504 Seca12g06260 12 154430459 154439504 ECH