Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06160 ATGTTCATTGAGAGTTTCAAGGTTGAGAGCCCTCACGTGAAGTACACAGAGACTGAGATTCAGTCTGTGTACAAATATGAAACCACTGAGCTTGTTCACGAGAACAGGAATGACACTTACCAGTGGGTTGTCAAGCCCAAAACTGTCACATATGAATTTAAGACCAAAACCCATGTCCCTAAACTAGGGGTAATGCTTGTGGGGTGGGGTGGAAACAATGGTTCAACCCTCACTGGTGGTGTTATTGCTAACAAAGAGGGTATTTCATGGGCAACAAAGGACAAGATTCAACAAGCCAATTATTTTGGGTCGCTGACCCAAGCATCCGCTATCAGAGTGGGGTCTTTCCAAGGAGAGGAAATCTATGCCCCATTCAAGAGTCTGCTTCCAATGGTAAACCCTGAAGACATTGTGTTTGGGGGATGGGATATCAGTAACATGAACCTGGCTGATGCTATGGCCAGAGCTAGGGTCTTTGACATTGACCTACAGAAACAATTGAGGCCTTACATGGAATCCATGGTTCCACTCCCTGGAATCTATGACCCGGATTTCATTGCTGCTAACCAAGGAGACCGTGCCAACAACGTCATCAAAGGCACAAAGAAAGAACAACTTCAACAAATCATCAAAGACATTAAGGAGTTTAAGGAAGCTACCAAGGTTGACAAGGTAGTTGTCCTGTGGACTGCCAACACAGAGAGATACAGCAATGTTGTTGTTGGACTAAATGACACCATGGAAAACCTCTTGGCTTCCTTGGACAGGAATGAGTCTGAGATTTCCCCTTCCACCTTGTATGCCTTAGCTTGTGTTCTAGAAAATGTCCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGGGCTGATTGATCTAGCCATCAAGAGGAACAGTTTGATTGGTGGAGATGACTTCAAGAGTGGTCAGACCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCTGGTATCAAGGTACATTTGTTTTTTTACCCAACATCAATAGTGAGTTACAACCATCTTGGAAACAATGATGGTATGAATCTCTCTGCCCCACAAACTTTCCGTTCCAAGGAAATCTCCAAGAGCAATGTTGTTGATGATATGGTTAATAGCAATGCTATCCTCTATGAGCCTGGTGAACATCCAGACCATGTTGTTGTTATTAAGTATGTGCCTTATGTGGGGGACAGCAAGAGAGCCATGGATGAGTACACTTCAGAGATATTCATGGGAGGGAAGAACACAATTGTGCTGCACAACACATGTGAGGATTCACTATTAGCAGCTCCTATTATCTTGGACTTGGTCCTTCTTGCAGAGCTCAGCACTCGAATCCAGTTTAAAGCTGAAAATGAGGACAAGTTTCACTCATTCCACCCTGTTGCTACCATCCTCAGTTACCTGACCAAGGCCCCTCTTGTCCCACCAGGTACACCAGTGGTGAATGCATTGTCAAAGCAGAGAGCTATGCTGGAAAACATACTGAGAGCTTGTGTTGGATTGGCTCCTGAGAACAACATGATCCTGGAATACAAATGA 1551 0.4455 MFIESFKVESPHVKYTETEIQSVYKYETTELVHENRNDTYQWVVKPKTVTYEFKTKTHVPKLGVMLVGWGGNNGSTLTGGVIANKEGISWATKDKIQQANYFGSLTQASAIRVGSFQGEEIYAPFKSLLPMVNPEDIVFGGWDISNMNLADAMARARVFDIDLQKQLRPYMESMVPLPGIYDPDFIAANQGDRANNVIKGTKKEQLQQIIKDIKEFKEATKVDKVVVLWTANTERYSNVVVGLNDTMENLLASLDRNESEISPSTLYALACVLENVPFINGSPQNTFVPGLIDLAIKRNSLIGGDDFKSGQTKMKSVLVDFLVGAGIKVHLFFYPTSIVSYNHLGNNDGMNLSAPQTFRSKEISKSNVVDDMVNSNAILYEPGEHPDHVVVIKYVPYVGDSKRAMDEYTSEIFMGGKNTIVLHNTCEDSLLAAPIILDLVLLAELSTRIQFKAENEDKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENILRACVGLAPENNMILEYK. 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06160 516 Pfam Myo-inositol-1-phosphate synthase 62 500 IPR002587 GO:0004512|GO:0006021|GO:0008654
Seca12g06160 516 Pfam Myo-inositol-1-phosphate synthase 310 429 IPR013021 -
Seca12g06160 516 Gene3D - 1 339 - -
Seca12g06160 516 Gene3D - 387 516 - -
Seca12g06160 516 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 4 516 IPR036291 -
Seca12g06160 516 PANTHER MYO-INOSITOL-1 PHOSPHATE SYNTHASE 1 516 IPR002587 GO:0004512|GO:0006021|GO:0008654
Seca12g06160 516 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 309 428 - -
Seca12g06160 516 FunFam inositol-3-phosphate synthase 388 516 - -
Seca12g06160 516 PIRSF Myoinositol-ppht_synth 50 516 IPR002587 GO:0004512|GO:0006021|GO:0008654
Seca12g06160 516 FunFam Inositol-3-phosphate synthase 1 1 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06160 Seca-Chr12 153499490 153503318 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06160 K01858 - gmx:100800820 981.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06160 12 153499490 153503318 Seca12g06160 12 153499490 153503318 ECH
Seca12g06160 12 153499490 153503318 Seca6g01948 6 77792045 77796351 PCT