Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06080 ATGGGCAGGTTGTGGGGATGCACGATGGTTCCCAATCTTCTTTTTGCGCTAATAATAACCGGCACCATATTGGAAGTCAAACCAGTGGTGGCTATTACGGGTGTTCCACTTCAGACGAATTCCCGATGGATAGTGAACCAAGATGGCCAAAGAGTGAAACTGGCATGTGTCAATTGGGTGTCCCATTTGGAAGCTGTGGTCGCTGAGGGGCTTAGCAAGCAGCCGGTGGATGTGATCTCAAAGGGAATCAAGTCCATGGGCTTCAACTGTGTCAGGCTCACTTGGCCCATTCTCCTCCTTACCAATGACTCTCTTGCTTCTCTCACCGTTAGACAATCCTTTCAGAGCCTTGGCCTCCTTGAAACCGTTGCTGGTGTCCAAGCCAACAACCCCTCCATCATCGATCTTACCCTCATCCAAGCTTTCCAGGAAGTGGTGAAAAGTCTTGGGGACAATGATGTGATGGTGATTTTGGACAACCACATCACCCAGCCAGGGTGGTGCTGCAGTAACTCGGACGGCAATGGGTTTTTCGGTGACCGAAATTTCGACCCGAACCAGTGGATCGTGGGCCTTACCAAGATGGCTAACCTTTTCAATGGGGTGGATAATGTGGTGGGCATGAGCTTGAGAAATGAGCTCCGAGGCCCCAAACAGAATGTCAACGATTGGTACAGGTATATGGTGCAAGGAGCAGAAGCGGTTCATGCAGCAAACCCAAATGTTCTTGTGATTCTATCTGGATTAAGTTTTGACAAAGACTTGTCGTTTATTCGAAATCGACCGGTAAACCTCACGTTCAAAGGAAAACTAGTATTTGAGGTGCATTGGTATGCCTTCACTGATGGTCAAGCTTGGGTTAATGGGAATCCAAATCAAGTATGTGGACAAGTGACTGGAAATATGAAGAGAATGTCTGGCTACCTAGTAGACCAAGGATGGCCATTGTTTATGAGTGAATTTGGGGTGGACTTAAGAGGTACCAATGTGAACGACAATCGTTATCTTAACTGTTTTATTGCAATGGTAGCTGAGCTTGATTTGGATTGGGCCTTGTGGACATTAGTGGGCAGCTACTATTTTAGACAAGGGGTTATAGGAATGGAAGAGTATTATGGACTTCTCAATTGGGACTGGACCCAAGTTAGAAATGCTGGTTTCTTACATAGGATCACTGCCCTCCAACTTCCATTTCGAGGACCAAAGATTATACAAGGCAATTCATACAAATTGATATTCCATCCTTCAACGGGTTTGTGTGTCATAAGAAAGTCACTATTTGAATCACAACTGACATTGGGTCCATGCTCTCTTTCTGATGGTTGGAAATACACACCCCAAAAGATACTATCAATAAAGGGTACATACGATTGCATACAAGCGGAAAATGAAGGGATGCCTGCAACTCTTAGCATAATATGCTCAAGTCCTAGCTCTAAATGGGAAATGATCTCAGATTCGAAGTTGCACCTTTCATCTAAAATTAACAACGGTTCTAATGTTTGTCTAGATGTAGATGATAACAACATCATTGTCACCAATGCTTGTAAATGCTTGAGCAAAGATCGTACATGTGACCCTGCAAGCCAATGGTTCAAACTTATTGATAGTGGAAAAAGGTCAATCTCAACAACCTCATCATTATCCATGTTGAATTTACCTGATCTTTTTTGGAGTTCATGGAGCTCAACATAA 1695 0.4401 MGRLWGCTMVPNLLFALIITGTILEVKPVVAITGVPLQTNSRWIVNQDGQRVKLACVNWVSHLEAVVAEGLSKQPVDVISKGIKSMGFNCVRLTWPILLLTNDSLASLTVRQSFQSLGLLETVAGVQANNPSIIDLTLIQAFQEVVKSLGDNDVMVILDNHITQPGWCCSNSDGNGFFGDRNFDPNQWIVGLTKMANLFNGVDNVVGMSLRNELRGPKQNVNDWYRYMVQGAEAVHAANPNVLVILSGLSFDKDLSFIRNRPVNLTFKGKLVFEVHWYAFTDGQAWVNGNPNQVCGQVTGNMKRMSGYLVDQGWPLFMSEFGVDLRGTNVNDNRYLNCFIAMVAELDLDWALWTLVGSYYFRQGVIGMEEYYGLLNWDWTQVRNAGFLHRITALQLPFRGPKIIQGNSYKLIFHPSTGLCVIRKSLFESQLTLGPCSLSDGWKYTPQKILSIKGTYDCIQAENEGMPATLSIICSSPSSKWEMISDSKLHLSSKINNGSNVCLDVDDNNIIVTNACKCLSKDRTCDPASQWFKLIDSGKRSISTTSSLSMLNLPDLFWSSWSST. 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06080 564 Gene3D Glycosidases 35 394 - -
Seca12g06080 564 Pfam Cellulase (glycosyl hydrolase family 5) 75 355 IPR001547 GO:0004553|GO:0071704
Seca12g06080 564 SUPERFAMILY Ricin B-like lectins 403 534 IPR035992 -
Seca12g06080 564 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 30 537 - -
Seca12g06080 564 SUPERFAMILY (Trans)glycosidases 36 385 IPR017853 -
Seca12g06080 564 CDD RICIN 409 534 IPR000772 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06080 Seca-Chr12 152668907 152673340 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06080 36 539 Glycoside Hydrolase AT1G13130 60.672 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06080 - - gmx:100790415 947.192
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06080 12 152668907 152673340 Seca12g06080 12 152668907 152673340 ECH