Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05734 ATGGCGGTGGAGGAGGGTATTGAGATGGTGGCATTGGAGAGTCTAGGAAAAGGGTTCGATTTGGCTAGCGATTTTCGTTTGAGGTTTGCTAAGGGGATTCGTGGAGGGAAGGATAGTAAGAGGTTGGTGGTGCTTGATGAACAGAACAAAAGGGATATTTTCATTCCTGGAGCTGGAGGAGCTACTACAATTAAAGGGGTTTCTGAGAATATTCGATGTGATAAAGGGGATCGAATACGCTTCAAGTCTGATGTACTTGAATTCAACCAGATGTCTGAGTTGCTTAATCAGAAATCAGGAGTGCAAGGAAAAGTTCCTTCTGGCTATTTCAATGCTCTTTTTGATTTGAGTGGGGATTGGTTTCGTGATGCTGCTGACATCAAATATCTTGCTTTTGATGGGTATTTCATTTCACTCTACTATTTGCACCTCACAGCTTCTCCACTAATACTGCAAGAGGAAGTAAAGAAGTCTGTTCCAGCTCAATGGGATCCAGCTTCATTGTCTAGGTTCATCCAGACATATGGCACACATATAATAGTAGGCATGGCTGTTGGAGGTCAAGATGTAATCTGTGTCAAACAAAAACATTCTTCAAAGATTCCTCCCGGTGATCTCAGAAGGCATTTAGAGGATCTTGGAGATTTTTTATTTTCAGATGTTAGAAGCCCTTCTTTACTACAAAGGAAGACAGCAGATGGCAAACAGAAGGTCCCTGAGGTCTTTAGTCGTGTGATGCAATCAAACACAATGCAGTTCACCAGTATTTCAGAAACATCAAGCAAGGATGGCCTCACTATTATCTGCTCAAAAAGAGGAGGGGATGTGTACAAGCACACTCACTCAAATTGGCTCCAGACAGTGCCTTCTAGTCCTGAAGCAATCCTCTTCAAGTTTGTTCCTATTTCCTCACTTCTGACCGGAATTCCTGGAAGTGGCTATCTTAGTCATGCAATCAATTTGTATTTACGCTACATAAACATGCAAGATGGTAATTTGACTTCCCAGCATGTACAAAATGCCCCTCTTGGTGGAGATAAGCCTTCTCCCGACGATTTGCAATATTTCTTGGAGTTTCAAATTCCGAGGCAATGGGCGCCCATGTTTTGTGAGCTGCCTCTCAGGCATCAGCGGAGAAAGACTTCTTCCCCTTCCATGCAATTTAGTTTCTTGGGTCCAAAGCTTCATATCAGCTCTACACAGGTGGTAAGTGAACAAAAACCTGTGGTTGGCCTTCGCATGTACTTGGAGGGCAGGAAATGTGATAGACTTGCTTTACATATACATCATCTTTCAAGCCTCCCAAATAAAATGATGCTCTCTTCAGGCACCTCAACCCCGAGCATGCAATCCATATGGCGAGGATCTGATGATAATGAATCCAGTGACCAATTTCTGGAACCAATCAGATGGAAGAGATTCTCAAATGTGTGCACATCAGTGGTCAAGCATGACCCTAACTGGTTGAATAGTTCAGGAGGTGTTTATATTGTAACTGGTGCACAACTTCTTAGCAAAGGGAGTTGGCCAAGGAATGTGCTTCATCTGCGTCTTCTCTTTACTCATATACCAAATTGCAGTATCCGGAAGTCAGAGTGGGCTGGTGCACCAGAGGCTTCAAGAAAATCATCTTTCCTCACAAATTTGAGCACAACATTTTCATTCACACAGCATAGTGCCACTGGTCCACCTAAGCAGGCTCCAACTGCACTTAACTCTGGCATTTATCCAGACGGTCCACCTGTGCCGGTTCGCTCTGGTAAACTACTTAAGTATGTGGAGACAGCTGAGGTTGTGCGAGGCCCCCATGATGCTCCTGGCCATTGGTTGGTAACGGCTGCTAAGCTTGTCACTGATGGTGGTAAGATTGGGTTACAGGTAAAGTTTGCATTGTTAGATTACTGGTGA 1908 0.4397 MAVEEGIEMVALESLGKGFDLASDFRLRFAKGIRGGKDSKRLVVLDEQNKRDIFIPGAGGATTIKGVSENIRCDKGDRIRFKSDVLEFNQMSELLNQKSGVQGKVPSGYFNALFDLSGDWFRDAADIKYLAFDGYFISLYYLHLTASPLILQEEVKKSVPAQWDPASLSRFIQTYGTHIIVGMAVGGQDVICVKQKHSSKIPPGDLRRHLEDLGDFLFSDVRSPSLLQRKTADGKQKVPEVFSRVMQSNTMQFTSISETSSKDGLTIICSKRGGDVYKHTHSNWLQTVPSSPEAILFKFVPISSLLTGIPGSGYLSHAINLYLRYINMQDGNLTSQHVQNAPLGGDKPSPDDLQYFLEFQIPRQWAPMFCELPLRHQRRKTSSPSMQFSFLGPKLHISSTQVVSEQKPVVGLRMYLEGRKCDRLALHIHHLSSLPNKMMLSSGTSTPSMQSIWRGSDDNESSDQFLEPIRWKRFSNVCTSVVKHDPNWLNSSGGVYIVTGAQLLSKGSWPRNVLHLRLLFTHIPNCSIRKSEWAGAPEASRKSSFLTNLSTTFSFTQHSATGPPKQAPTALNSGIYPDGPPVPVRSGKLLKYVETAEVVRGPHDAPGHWLVTAAKLVTDGGKIGLQVKFALLDYW. 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05734 635 ProSiteProfiles Membrane attack complex/perforin (MACPF) domain profile. 1 336 IPR020864 -
Seca12g05734 635 Pfam MAC/Perforin domain 110 322 IPR020864 -
Seca12g05734 635 PANTHER MACPF DOMAIN-CONTAINING PROTEIN CAD1 9 325 IPR044663 GO:0006952|GO:0012501|GO:2000031
Seca12g05734 635 SMART MACPF_8 127 324 IPR020864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05734 Seca-Chr12 149034695 149041228 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05734 - - gmx:100781070 1129.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05734 12 149034695 149041228 Seca12g05734 12 149034695 149041228 ECH
Seca6g01609 6 68908682 68916372 Seca12g05734 12 149034695 149041228 PCT