Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05696 ATGAACGGAAGCGGAAGAAGAACCGCTCGGAGCAGAGTCAGATCCTCCTCCGAAGCCGACGCCGATTTTCTCCGCGAAAGGAGGCCAACGTTGAACCGTCGTAGAGACAGGAGCAAATACGGAAGCTCCATTCCGTTATTTAACAATGCCAATCTCAAAGTGGTGCTCGGTATCAGCTTCTTCGCATTCTTCCTCATCTTGTTTCTGATCCATCACCTCGTGAATTCCGTCGCAGAACCTCATCTGCCTCGCGCCGTGACGCCATTTCCCGCGCCAAAGTTAATGGACCTTCCTCAGTTTCAAGGTCAGCACAAGGAGAGTTTGTACTGGGGAACTTATCGTCCTCATGTCTATCTCGGAATTCGTGCCAGGACTCCACAATCTTTGATGGCTGGATTAATGTGGATTGGCGTGAAGGATGGCAGATACCACATGCGGCATGTTTGCAGGCACGAAGATGACCTAAGTACTTATGGTTGGATAAAGCATAATGGACGTGATTTTGGGCATCAAGTACTGGCTGACCATGGCATGATCATGGCTACTGAGTTTTTAAAATCAAAGGAGGACGGCAGTGGTTATGGAGGTGACTGGGCAGTTCGAATTAATGTACAAATTGATAAGTCTAAGTGGAATGAGGAATTTGGGAGCGGTGCCCAGCTCTTTTTCTATTTGGCTGATGAAAGTGGTAATGCTCTAGATGTAAGCAGAGAAAACTTGAACACTCACGAGGATTCTTTACTTGCATCTGGCTCTCGAACAGACATAGGAGATTGGCAGCTACATTTGAAATCAATGGATAATCTGGAACTGCATTATTCTGGATTTCGTACACCTCACTTTCACAATTTGTCTGATCTTGTTGAGGAAAATCTCACATCACAAATAAGAAAGCATGCCCGGCTACAGCTATCCGACTCATCAGATGATTCTCCAAATGTGTTAGTTTTTCAGATCATTGGTGGATTTCCTTTCACAACAGATATTGTACTTGTCTCTGGAACTGATTCAGAAAGTTCAAGAGTAGAAGAGCGCATCAGCAGTCTAACAGGCACCTCACTGTCTAATCAACTGAAATATAAAGAACAAGCATTTGATCAGAAGTTTGAGAAAATTTTCAATTTGGCTGGCAAGGTGGATTCAGAATCCATATCTGTTGGTAAGGCTGCTGTTGGAAACTTAATAGGTGGCATCGGCTACTTCTATGGCCAGTCAAAAATTGCTCTTAATCTTAGAGAACATGTTAATTATGTATCATATTGGCCTGCTGAGCTTTACACAGCTGTACCAAGTCGATCTTTCTTTCCAAGAGGATTTTTATGGGATGAAGGTTTTCATCAACTTCTAATCTGGTTAGTTTCCTGCGCTAATCCTTCATGA 1380 0.437 MNGSGRRTARSRVRSSSEADADFLRERRPTLNRRRDRSKYGSSIPLFNNANLKVVLGISFFAFFLILFLIHHLVNSVAEPHLPRAVTPFPAPKLMDLPQFQGQHKESLYWGTYRPHVYLGIRARTPQSLMAGLMWIGVKDGRYHMRHVCRHEDDLSTYGWIKHNGRDFGHQVLADHGMIMATEFLKSKEDGSGYGGDWAVRINVQIDKSKWNEEFGSGAQLFFYLADESGNALDVSRENLNTHEDSLLASGSRTDIGDWQLHLKSMDNLELHYSGFRTPHFHNLSDLVEENLTSQIRKHARLQLSDSSDDSPNVLVFQIIGGFPFTTDIVLVSGTDSESSRVEERISSLTGTSLSNQLKYKEQAFDQKFEKIFNLAGKVDSESISVGKAAVGNLIGGIGYFYGQSKIALNLREHVNYVSYWPAELYTAVPSRSFFPRGFLWDEGFHQLLIWLVSCANPS. 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05696 459 MobiDBLite consensus disorder prediction 1 37 - -
Seca12g05696 459 SUPERFAMILY Six-hairpin glycosidases 358 451 IPR008928 GO:0005975
Seca12g05696 459 FunFam Mannosyl-oligosaccharide glucosidase GCS1 95 376 - -
Seca12g05696 459 Gene3D - 377 455 IPR012341 GO:0005975
Seca12g05696 459 Gene3D - 95 376 IPR038518 -
Seca12g05696 459 MobiDBLite consensus disorder prediction 11 37 - -
Seca12g05696 459 Pfam Glycosyl hydrolase family 63 C-terminal domain 350 452 IPR031335 -
Seca12g05696 459 Pfam Glycosyl hydrolase family 63 N-terminal domain 107 267 IPR031631 -
Seca12g05696 459 PANTHER MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE 54 452 IPR004888 GO:0004573|GO:0009311
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05696 Seca-Chr12 148583118 148590733 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05696 79 451 Glycoside Hydrolase AT1G24320 53.316 5.38e-136 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05696 K01228 - gmx:100795691 764.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05696 12 148583118 148590733 Seca12g05696 12 148583118 148590733 ECH