Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05670 ATGGCGTTGAATTTCTCCCATCGACCGATTTTTGCCGGTGGTTTGTCTGAGGATAATTTGGTTGCGCCGATGAGGATGGGGAATGGATACCGCGTGGAGGGGATTCAAGAGAAGAGTGGTGGTGATGGGTTTGGTAAGGGATGGCATGATGTTGAGAATTGCTTTGATTATGGAAGAGATAGATGTGATAGGGGTGCCAGTACCCAGGATGCTGTCTCTAAGGACATTCTTGATCTCTTGCCTTCGGATCCCTTTGGCATGGACATCAGCACTACCTTCACGGCTATCACCGGATGGCTTGAGGATTTGGAGGTTGATTATGGTGCATACGGTGGGGATGAGCTTGGGGCGAGCGGCGATAATTACCAGCTGTTTGCTGGGTTGAATTTCATTTGGAATAATGCTATGAGGTTCCACGGGTTCCCAGGAGGAAACATGTGTGTTGAGGAGAAGAAAATGCACGGGCCGAGTGGATTGGGGGAGTGTTCTCGAAGAGAAGATGGAGCTTCTGCTTCCTGCAATTTTGATTTTGGATCTGCTTGTGACATGGATGACATGTTGGATTTTGGCTGTGATTATAAAGATGTGCCGATTGCTAGCGTGTCGGGGGACACAGATATGGATGATGTGAATCGCCTTGGAGGGGATGATCCTGAACTCACTCCCCATCCAGCTTTGAGTTTTTGCCTTAGTTATCTGGGGTTGTCTGATCTTCTTCTTGTTGAAAGAGTATGCAAATCTCTGCATGCTACGGTTCGTGGTGATCCGCTTTTGTGGAGAAGTATCCACATTGACCAGCCTTTAAATGAGAGGATTACAGATGATGTTCTCTTGCAATTAACCAATAGAGCTCAAGGAAATCTTCAGTGCTTGAGCCTGGTGGAGTGTACTAGGATAACTGATGATGGTCTGAAGCGTGTTCTTGAAGCTAATCCCAAGTTAATCAAGTTGAGTGTTCCTGGATGTACAAGACTCAGTATTGAAGGTATTGTGGCTATTTTAAAAGCTTACAACTCTATGGGTGCCCAAGGGGTGAAGCATCTGCACATAGGTGGCCTTTATGGTGTTACCCAAAAGCATTTTGAAGAACTGAAGCTCTTGTTGGGAACTGATAGCCAACTACTGCAGCACTCTCGCAAACCTCACTTCTATCGCAGGGGAAACTTTTATCTGTCTCGTGATGATGATCGAGCCATAGATATTGAAGTTTGTCCACGATGCCAGAATTTAAGGCTTGTGTATGATTGTCCAGCAGAGGGTTGTCAAGGGATGGGGCACACCACTCAGGCGTGCAGGGCATGCACTCTTTGCATACCACGGTGTAGTCAGTGTGGCTGCTGCATCAATGACAGTGAATATGAGGAAACATTTTGTCTGGAATTGCTTTGTTCTTCTTGTTCTAAGCAGCTAATCAAATGTTCAGAAAGGACAGATAGAAAGGTTGGGCCAGCCAAGTCATTTGTTCTCCTTGAACAAAGTTAG 1482 0.4609 MALNFSHRPIFAGGLSEDNLVAPMRMGNGYRVEGIQEKSGGDGFGKGWHDVENCFDYGRDRCDRGASTQDAVSKDILDLLPSDPFGMDISTTFTAITGWLEDLEVDYGAYGGDELGASGDNYQLFAGLNFIWNNAMRFHGFPGGNMCVEEKKMHGPSGLGECSRREDGASASCNFDFGSACDMDDMLDFGCDYKDVPIASVSGDTDMDDVNRLGGDDPELTPHPALSFCLSYLGLSDLLLVERVCKSLHATVRGDPLLWRSIHIDQPLNERITDDVLLQLTNRAQGNLQCLSLVECTRITDDGLKRVLEANPKLIKLSVPGCTRLSIEGIVAILKAYNSMGAQGVKHLHIGGLYGVTQKHFEELKLLLGTDSQLLQHSRKPHFYRRGNFYLSRDDDRAIDIEVCPRCQNLRLVYDCPAEGCQGMGHTTQACRACTLCIPRCSQCGCCINDSEYEETFCLELLCSSCSKQLIKCSERTDRKVGPAKSFVLLEQS. 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05670 493 SUPERFAMILY F-box domain 222 264 IPR036047 GO:0005515
Seca12g05670 493 SUPERFAMILY RNI-like 270 358 - -
Seca12g05670 493 Gene3D Ribonuclease Inhibitor 222 478 IPR032675 -
Seca12g05670 493 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 122 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05670 Seca-Chr12 148245667 148249038 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05670 - - aip:107632017 731.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05670 12 148245667 148249038 Seca12g05670 12 148245667 148249038 ECH