Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05128 ATGGATGAAGAGTACGATGTAATTGTCCTTGGCACTGGCCTCAAGGAATGCATCCTCAGTGGCCTTCTCTCAGTTGATGGCCTCAAAGTGTTGCACATGGATCAAAATGACTACTATGGAGGGGCTTCTACATCTCTTAATCTTACACAGCTGTGGAAGCGATTTAGGGGAGATGACACGCCAGCAGAGAACTTGGGCTCAAGCAGAGAATACAATGTTGATATGATACCTAAGTTTATGATGGCCAATGGAGCTTTGGTCCGTGTACTCATCCACACAGATGTTACAAAGTATTTAAACTTCAAAGCTGTAGATGGAAGCTTTGTGTATAATAAGGGAAAGATTTACAAAGTTCCAGCAACAGATGTTGAAGCACTGAAATCACCTTTAATGGGACTGTTTGAGAAGCGCCGTGCTCGGAAGTTCTTCATTTATGTCCAAGATTATGAAGAGAGTGATCCCAAATCCCATGAAGGATTAGATTTGAACCAAGTTACAGCAAGGCAGCTGATATCGTATGTACCTACTGCCTTTCTCTTATTACTTGATTCAATAATGATGAAATATGGGTTGGAAGATGATACAGTTGACTTTATTGGTCATGCCTTGGCACTTCATCTTGATGATAGTTACTTGGATAAGCCAGCCAAGGATTTTGTGGAGAGAATTAAGATATATGCAGAGTCCCTGGCTCGCTTTCAAGGAGGCTCACCTTACATATATCCACTATATGGACTGGGAGAATTGCCTCAGGCATTTGCACGTTTGAGTGCTGTGTATGGTGGAACTTATATGCTGAACAAGCCAGAATGCAAGGTAGAGTTTGATGATGATGGGAAAGCCATTGGTGTGACTTCAGAAGGAGAAACAGCCAAATGCAAGAAAGTTGTGTGTGATCCATCATATCTGCCTGATAAGGTTCGGAATGTTGGAAAAGTTGCACGTGCAATATGTATTATGAGCCATCCTATTCCAGACACCAATGACTCTCACTCAGCACAAGTCATTTTGCCCCAGAAGCAACTTGGTCGGAAATCAGATATGTATCTCTTCTGCTGCTCTTATGCTCACAATGTAGCACCCAAAGGAAAATATATTGCTTTTGTTACAACAGAAGCAGAGACTGACCAACCTGAGGTGGAATTGAAGCCTGGAATTGACCTTCTTGGACCTGTAGATGAGATATTCTATGACATTTATGACAGATTTGAACCCACCAATGATCATGCTGCTGATGGTTGTTTCATCTCTACAAGCTATGATCCTACCACACACTTTGAAACCACAGTAAAAGATGTGGTTGCTATGTACAGTAAGATCACTGGAAAGGTTCTTGATCTTTCTGTGGACCTGAGTGCTGCAAGTGCTGCAACTGAAGAATGA 1383 0.4201 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDQNDYYGGASTSLNLTQLWKRFRGDDTPAENLGSSREYNVDMIPKFMMANGALVRVLIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQDYEESDPKSHEGLDLNQVTARQLISYVPTAFLLLLDSIMMKYGLEDDTVDFIGHALALHLDDSYLDKPAKDFVERIKIYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDDDGKAIGVTSEGETAKCKKVVCDPSYLPDKVRNVGKVARAICIMSHPIPDTNDSHSAQVILPQKQLGRKSDMYLFCCSYAHNVAPKGKYIAFVTTEAETDQPEVELKPGIDLLGPVDEIFYDIYDRFEPTNDHAADGCFISTSYDPTTHFETTVKDVVAMYSKITGKVLDLSVDLSAASAATEE. 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05128 460 FunFam Guanosine nucleotide diphosphate dissociation inhibitor 312 402 - -
Seca12g05128 460 SUPERFAMILY FAD/NAD(P)-binding domain 405 448 IPR036188 -
Seca12g05128 460 Gene3D - 2 444 IPR036188 -
Seca12g05128 460 PRINTS Rab GDI protein signature 16 28 IPR000806 GO:0005093|GO:0015031
Seca12g05128 460 PRINTS Rab GDI protein signature 197 211 IPR000806 GO:0005093|GO:0015031
Seca12g05128 460 PRINTS Rab GDI protein signature 417 437 IPR000806 GO:0005093|GO:0015031
Seca12g05128 460 PRINTS Rab GDI protein signature 75 88 IPR000806 GO:0005093|GO:0015031
Seca12g05128 460 PRINTS Rab GDI protein signature 363 381 IPR000806 GO:0005093|GO:0015031
Seca12g05128 460 PRINTS Rab GDI protein signature 295 309 IPR000806 GO:0005093|GO:0015031
Seca12g05128 460 PRINTS Rab GDI protein signature 338 354 IPR000806 GO:0005093|GO:0015031
Seca12g05128 460 PRINTS Rab GDI protein signature 396 415 IPR000806 GO:0005093|GO:0015031
Seca12g05128 460 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 57 402 - -
Seca12g05128 460 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 1 118 238 - -
Seca12g05128 460 PANTHER RAB GDP-DISSOCIATION INHIBITOR 1 453 IPR018203 GO:0005092|GO:0007264
Seca12g05128 460 Pfam GDP dissociation inhibitor 1 448 IPR018203 GO:0005092|GO:0007264
Seca12g05128 460 SUPERFAMILY FAD/NAD(P)-binding domain 1 370 IPR036188 -
Seca12g05128 460 FunFam Guanosine nucleotide diphosphate dissociation inhibitor 118 238 - -
Seca12g05128 460 PRINTS Rab GDI/REP protein family signature 69 86 IPR018203 GO:0005092|GO:0007264
Seca12g05128 460 PRINTS Rab GDI/REP protein family signature 24 41 IPR018203 GO:0005092|GO:0007264
Seca12g05128 460 PRINTS Rab GDI/REP protein family signature 135 150 IPR018203 GO:0005092|GO:0007264
Seca12g05128 460 PRINTS Rab GDI/REP protein family signature 245 266 IPR018203 GO:0005092|GO:0007264
Seca12g05128 460 PRINTS Rab GDI/REP protein family signature 6 24 IPR018203 GO:0005092|GO:0007264
Seca12g05128 460 PRINTS Rab GDI/REP protein family signature 86 102 IPR018203 GO:0005092|GO:0007264
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05128 Seca-Chr12 139298731 139307009 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05128 K17255 - gmx:100792036 851.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05128 12 139298731 139307009 Seca12g05128 12 139298731 139307009 ECH