Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05067 ATGGCTTCATCGGAGATCGAGGTGGTATCATCGGACTCCAAGCCCAACGACCAGCCTCCCATTCTCGATGTCTTCACTGCTTCTGCTCATGGCGACTTTCACAAATTGAGGACCTTTGTGGAACAAGATGGTGCCTCCGTTTCTGTTCCCGATGTTAATGGCTATTATGCTCTTCAATGGGCTTCCCTTAACAACTTCTATGAGATTGTATACTATCTCATTCAGCATGGAGCTGATGTCAATGCCAAAGACAACATGCAACAAACGGCATTGCATTGGGCGGCAGTTCGTGGCTCAACTGCAGCTGCTGATGTGCTCTTGGAGAATGGTGCCCGGGTCGAAGCTGCAGATATAAATGGATACCGGGCAGTTCATGTTGCTGCACAATATGGGCAGACAGCTTTTTTAAATCACATTGTTGTAAAGTACCATGCTGATTTTGATGTGCCTGATAATGACGGAAGGAGTCCTCTTCATTGGGCTGCATATAAGGGGTTTGCTGACACAATAAGATTGCTTCTATTTAGAGATGCAAGTCAAGGAAGACAAGATAAAGATGGTTGTACGCCGTTGCACTGGGCTGCATTAAGAGGACATGCAGAGGCATGTGCTGTGCTTGTACATGCAGGCACAAAGGAAGAATTGATGGTGAAGGACAATGCAGGATTCACTCCTGTACAGCTTGCATATGATAAAGGTCATCGGCATGTCGCCTCTTTCCTTTCTAATCAACAACGGGCTCATAGCAACCACTGGAGAGACAAACTTTGTAGTGGGATGGTGACAGATATTGGTTATGCTCCCATTTTATTGTGTATTATAGTCTTTCTTATGATCCTCTTCATCAACTCAGTCGTTGCAGCTCCTAACCTTAAAAAGATTACTGCTGTTGTTGGACTTTGGGCATGGACAGCTCTTTCTCTAGCAGTTGGAGCTTTGATTATGTTTTATAGGTGTAGTAGTAAAGATCCAGGTTATATAAAGCGGCCGGGAGACTTGGGTACTCAACGTGATACAGAGGATCCTTTGTTGAATATTGATCTAAATAGTTCCTCTGTTTGGATGGGAAATTGGTCTCAACTTTGCCCTACCTGCAAGATAATAAGACCTGTCCGATCTAAGCATTGCCCTACTTGTAAGCGTTGTGTGGAACAGTTCGACCACCATTGTCCATGGATATCTAACTGTGTTGGGAAGAGGAACAAAAGAGATTTCCTTATTTTCATCTGCATGGGAACTTTGACTTCTTTCCTTTCGGCTGCCATTGCAATTCAGAGAATTTGGACATCAACACCAACGTTACTGGCAGGAGAAACATGGATCCATCATGTTTTAGTAACACATCCAGGTCTTGTTGCATTTTTGGTGATGGACGCCTTTGTCTTCATTGCGGCTACGACTTTGACAATAACACAGGCTTCCATGATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGCTATGAGTATCTTCGTGGCCCCGATGGTCGGTTCAGAAATCCATATAATCATGGTTGTTGGAAGAATTGTGCTGATTTCCTTTTTCTGGGTTACACAAATGATGATCATATTGCTTGGCGTCCATTACAGCAGGTGGCGACTTAG 1614 0.4411 MASSEIEVVSSDSKPNDQPPILDVFTASAHGDFHKLRTFVEQDGASVSVPDVNGYYALQWASLNNFYEIVYYLIQHGADVNAKDNMQQTALHWAAVRGSTAAADVLLENGARVEAADINGYRAVHVAAQYGQTAFLNHIVVKYHADFDVPDNDGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGHAEACAVLVHAGTKEELMVKDNAGFTPVQLAYDKGHRHVASFLSNQQRAHSNHWRDKLCSGMVTDIGYAPILLCIIVFLMILFINSVVAAPNLKKITAVVGLWAWTALSLAVGALIMFYRCSSKDPGYIKRPGDLGTQRDTEDPLLNIDLNSSSVWMGNWSQLCPTCKIIRPVRSKHCPTCKRCVEQFDHHCPWISNCVGKRNKRDFLIFICMGTLTSFLSAAIAIQRIWTSTPTLLAGETWIHHVLVTHPGLVAFLVMDAFVFIAATTLTITQASMIARNVTTNELANSSRYEYLRGPDGRFRNPYNHGCWKNCADFLFLGYTNDDHIAWRPLQQVAT. 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05067 537 ProSiteProfiles Ankyrin repeat region circular profile. 153 179 - -
Seca12g05067 537 ProSiteProfiles Ankyrin repeat profile. 119 152 IPR002110 GO:0005515
Seca12g05067 537 ProSiteProfiles Ankyrin repeat region circular profile. 86 117 - -
Seca12g05067 537 FunFam S-acyltransferase 9 139 - -
Seca12g05067 537 ProSiteProfiles Ankyrin repeat region circular profile. 186 210 - -
Seca12g05067 537 ProSiteProfiles Ankyrin repeat profile. 186 218 IPR002110 GO:0005515
Seca12g05067 537 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED 14 523 - -
Seca12g05067 537 ProSiteProfiles Ankyrin repeat profile. 153 185 IPR002110 GO:0005515
Seca12g05067 537 SUPERFAMILY Ankyrin repeat 24 243 IPR036770 -
Seca12g05067 537 Pfam Ankyrin repeats (3 copies) 117 182 IPR002110 GO:0005515
Seca12g05067 537 Pfam Ankyrin repeats (3 copies) 27 116 IPR002110 GO:0005515
Seca12g05067 537 Pfam Ankyrin repeats (3 copies) 184 243 IPR002110 GO:0005515
Seca12g05067 537 Pfam DHHC palmitoyltransferase 360 487 IPR001594 GO:0016409
Seca12g05067 537 ProSiteProfiles DHHC domain profile. 360 410 - -
Seca12g05067 537 ProSiteProfiles Ankyrin repeat region circular profile. 53 85 - -
Seca12g05067 537 SMART ANK_2a 186 215 IPR002110 GO:0005515
Seca12g05067 537 SMART ANK_2a 53 82 IPR002110 GO:0005515
Seca12g05067 537 SMART ANK_2a 86 115 IPR002110 GO:0005515
Seca12g05067 537 SMART ANK_2a 119 149 IPR002110 GO:0005515
Seca12g05067 537 SMART ANK_2a 221 250 IPR002110 GO:0005515
Seca12g05067 537 SMART ANK_2a 153 182 IPR002110 GO:0005515
Seca12g05067 537 Gene3D - 7 139 IPR036770 -
Seca12g05067 537 ProSiteProfiles Ankyrin repeat profile. 53 85 IPR002110 GO:0005515
Seca12g05067 537 FunFam S-acyltransferase 140 248 - -
Seca12g05067 537 ProSiteProfiles Ankyrin repeat profile. 86 118 IPR002110 GO:0005515
Seca12g05067 537 Gene3D - 140 255 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05067 Seca-Chr12 137811525 137821372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05067 5 234 Miscellaneous Gene Families AT2G31820 25.103 7.79e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05067 K20032 - gmx:100798740 1010.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05067 12 137811525 137821372 Seca12g05067 12 137811525 137821372 ECH