LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca12g05064	ATGTGCCGAGCAAAAGGTGGGTCACCTGGATTCAAAGTAGCAATCTTGGGGGCTGCTGGGGGAATTGGTCAACCCCTTGCTTTGCTGATGAAGATGAACCCATTGGTTTCAGTTCTTCATCTCTATGATGTTGTCAACACCCCTGGTGTCACAGCTGATGTTAGTCACATGGACACTGGTGCAGTGGTTCGTGGATTTCTGGGGCAGCCACAACTTGAGAGTGCACTAACTGGCATGGACTTAGTAATTATACCTGCTGGTGTGCCAAGGAAACCTGGAATGACAAGGGATGATTTATTTAAAATAAATGCTGGAATTGTGAGGACCCTTTGTGAAGGAATTGCTAAGTGCTGCCCCAATGCAATTGTCAACTTGATTAGTAATCCAGTGAATTCCACTGTTGCAATTGCTGCTGAGGTTTTCAAGAAAGCTGGAACATATGATCCAAAGAAACTATTGGGTGTTACAACCCTTGATGTTGTGAGGGCAAATACTTTTGTGGCTGAGGTACTTGGAGTTGATCCAAGAGAGGTTGATGTTCCAGTGGTGGGAGGTCATGCAGGAGTCACAATATTGCCTCTTTTGTCACAGGTTAAGCCTCCAAGTAGCTTCACTGCAGAAGAAACTGAATACCTGACAAATCGCATCCAAAATGGTGGAACAGAAGTTGTTGAGGCAAAAGCTGGGGCTGGCTCTGCAACACTATCAATGGCATTTGCAGCTGCCAAGTTTGCTAATGAATGCCTCCGTGGCTTGAAAGGAGAAGCTGGGGTGGTTGAGTGTGCTTTTGTTGATTGTCAGGTCACAGAACTTCCCTTCTTTGCAACCAAGGTACGTCTTGGTCGTGGTGGAGCAGAAGAGATATATCAACTGGGTCCCCTGAATGAGTATGAAAGGATTGGGTTGGAAAAAGCAAAGGAAGAGTTAGCAGGAAGCATTCAGAAGGGGATAGACTTCATCAGAAAATAA	969	0.4551	MCRAKGGSPGFKVAILGAAGGIGQPLALLMKMNPLVSVLHLYDVVNTPGVTADVSHMDTGAVVRGFLGQPQLESALTGMDLVIIPAGVPRKPGMTRDDLFKINAGIVRTLCEGIAKCCPNAIVNLISNPVNSTVAIAAEVFKKAGTYDPKKLLGVTTLDVVRANTFVAEVLGVDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTAEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAFAAAKFANECLRGLKGEAGVVECAFVDCQVTELPFFATKVRLGRGGAEEIYQLGPLNEYERIGLEKAKEELAGSIQKGIDFIRK.	323

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca12g05064	322	Pfam	lactate/malate dehydrogenase, alpha/beta C-terminal domain	156	319	IPR022383	GO:0016616
	Seca12g05064	322	FunFam	Malate dehydrogenase	156	322	-	-
	Seca12g05064	322	Gene3D	-	156	322	IPR015955	GO:0003824\|GO:0016616
	Seca12g05064	322	FunFam	Malate dehydrogenase	9	155	-	-
	Seca12g05064	322	NCBIfam	malate dehydrogenase	12	321	IPR010097	GO:0006099\|GO:0030060
	Seca12g05064	322	SUPERFAMILY	LDH C-terminal domain-like	155	320	IPR015955	GO:0003824\|GO:0016616
	Seca12g05064	322	ProSitePatterns	Malate dehydrogenase active site signature.	155	167	IPR001252	GO:0006108\|GO:0016615
	Seca12g05064	322	Gene3D	-	3	155	-	-
	Seca12g05064	322	CDD	MDH_glyoxysomal_mitochondrial	11	320	IPR010097	GO:0006099\|GO:0030060
	Seca12g05064	322	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	11	154	IPR036291	-
	Seca12g05064	322	PANTHER	MALATE AND LACTATE DEHYDROGENASE	7	321	-	-
	Seca12g05064	322	Pfam	lactate/malate dehydrogenase, NAD binding domain	12	154	IPR001236	GO:0016491
	Seca12g05064	322	PIRSF	Lac_mal_DH	10	319	IPR001557	GO:0016616\|GO:0019752

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca12g05064	Seca-Chr12	137788952	137792974	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca12g05064	K00026		-	gmx:100170735	602.438

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca12g05064	12	137788952	137792974	Seca12g05064	12	137788952	137792974	ECH