Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05062 ATGTCTATAACCCAAAACCTTACCACCTCAATCTCTTCTTCTTCCTCTGCTTTCTTAGCTCCCTCCACCTTCAATTCTAGGAGTCAGGTGTCATTTCCTGTGAAGAGAGTGAGCATTTGTAAATGCGTTGCGACGCCCCAAGAAGCTGAGACTGTCTACAAGACAAAGGTCTCTCGCAATGCAAATATGGGTAAACTTCAAGCTGGCTATCTCTTTCCTGAGATTGCTAGAAGAAGGTCCGCACACTTGCTGAAATACCCTGATGCAAAAGTAATAAGCCTTGGAATCGGTGATACTACTGAACCAATTCCTGAAGTCATAACTTCTGCAATGGCACAGAGGTCACATGCATTGTCAACCATTGAAGGATATAGTGGTTATGGAGCTGAACAAGGTGAAAAGCCATTAAGAAGAGCAATTGCTTCAACATTTTACGGTGATCTTGGCATAGAAGAAGATGATATATTTGTCTCAGATGGAGCAAAGTGTGATATATCTCGTCTCCAGATTGTCTTTGGGTCAAATGTAAAAATGGCTGTGCAAGATCCTTCATACCCGGCATATGTAGACTCGAGTGTAATTATGGGCCAGACTGGCTTGTACCAGAAGGATATTGAGAAGTTTGCAAACATCGAATACATGAGGTGTAATCCAGAAAATGGTTTCTTCCCTGATTTGTCTTCTATTTCTCGACCAGATATAATTTTTTTCTGTTCGCCAAACAATCCGACTGGTGCTGCAGCAACAAGGGAGCAACTGACCCAACTAGTTCAGTATGCAAAGGACAATGGGTCTATAATAGTCTATGATTCGGCATATGCAATGTATATTACTGGTGACTACCCACACTCCATCTTTGAAATTCCTGGAGCCAAAGAGGTTGCCATTGAGACTGCATCATTTAGCAAGTATGCTGGGTTCACTGGAGTTCGACTAGGTTGGACTGTGGTTCCAAAGCAGTTACTATTTTCTGATGGATTTCCTGTTGCCAAGGATTTCAACCGTATTGTATGTACTTGTTTCAATGGCGCATCAAATATTTCCCAGGCGGGTGGTCTGGCTTGCCTTTCTCCAGAAGGCCTTAAGCAGGCTATGCAAGAGGTTATTGGATTCTACAAAGAAAATACTAGCATAATAGTGGAGACATTTGATTCTCTTGGGTTTAAAGTCTATGGAGGGAAATGTGCACCATATGTGTGGGTCCATTTCCCGGGCCGAAGCTCATGGGATGTATTCGGTGAGATTCTTGAAAAGACTCATGTGGTCACAACTCCTGGTAGTGGTTTTGGACCTGGTGGTGAAGGTTTTGTCAGGGTTAGTGCCTTTGGTCACAGGGAAAATATCTTGGAGGCCTGCAGAAGATTCAAGCAGCTGTACAAGTGA 1383 0.4317 MSITQNLTTSISSSSSAFLAPSTFNSRSQVSFPVKRVSICKCVATPQEAETVYKTKVSRNANMGKLQAGYLFPEIARRRSAHLLKYPDAKVISLGIGDTTEPIPEVITSAMAQRSHALSTIEGYSGYGAEQGEKPLRRAIASTFYGDLGIEEDDIFVSDGAKCDISRLQIVFGSNVKMAVQDPSYPAYVDSSVIMGQTGLYQKDIEKFANIEYMRCNPENGFFPDLSSISRPDIIFFCSPNNPTGAAATREQLTQLVQYAKDNGSIIVYDSAYAMYITGDYPHSIFEIPGAKEVAIETASFSKYAGFTGVRLGWTVVPKQLLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGLKQAMQEVIGFYKENTSIIVETFDSLGFKVYGGKCAPYVWVHFPGRSSWDVFGEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENILEACRRFKQLYK. 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05062 460 Gene3D - 101 358 IPR015421 GO:0003824
Seca12g05062 460 FunFam LL-diaminopimelate aminotransferase, chloroplastic 101 358 - -
Seca12g05062 460 SUPERFAMILY PLP-dependent transferases 70 455 IPR015424 -
Seca12g05062 460 Hamap LL-diaminopimelate aminotransferase [dapL]. 58 458 IPR019942 GO:0008483
Seca12g05062 460 PANTHER AMINOTRANSFERASE 5 460 IPR019942 GO:0008483
Seca12g05062 460 Gene3D Aspartate Aminotransferase, domain 1 71 456 IPR015422 GO:0003824
Seca12g05062 460 NCBIfam LL-diaminopimelate aminotransferase 58 457 IPR019942 GO:0008483
Seca12g05062 460 Pfam Aminotransferase class I and II 90 455 IPR004839 GO:0009058|GO:0030170
Seca12g05062 460 CDD AAT_like 92 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05062 Seca-Chr12 137639050 137646226 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05062 K10206 - gmx:100801405 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05062 12 137639050 137646226 Seca12g05062 12 137639050 137646226 ECH