Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g03685 ATGAGGAATTGGATGAGCACGGCGGTAGGCGCAGTAGCAAACTACACTGTTGTTCTGCCCATTCCTCTGCTATCCAATCGCAAAACCATCCCCAGAACGTCGCCGTATCTCATTTCTATTCTCACTCCCACTCGCCGCTTCCTTTCTGCTTCTTCCCGTCCTTCTTCTTTCACCGCTCATCACAATTTCTCTGATTATGGAGAAGACGGTCACTGCGTCACGACTTCAAGAAAAGGTTCAAAGGTGCTTCTTAAAGGGATGACTTACCCTGAGCTTCAGAAATGGGTTCAATCACATGGATACAGGCCTGGGCAGGCTATGATGTTATGGAAGCGTATGTATGGAAACAACATTTGGGCCCATCACATTGATGAGTTGGAAGGTTTGAACAAAGATTTCAAGAAGATGTTGAGTGAAAATGCTGAGTTCAAGGCACTTGCTCTGAAAGAAATTCACACAGCATCTGATGGAACTAGGAAGATTTTATTCACATTGGATGATGGGCTGATCATAGAAACAGTTGTCATACCTTGTGATAGAGGCAGGACTACTGTGTGTGTTTCAAGTCAAGTTGGATGTGCCATGAATTGTCAATTTTGCTATACTGGAAGGCAAGCTTTCTTTCTGCCTGTTATGATCAATTTAGTGGTTACTCCATGTTTTATCTTTGCTGCAAGTTTGTTATACATAATGGGTCTTAAGAGACATCTTACTGCCGCAGAAATAGTAGAGCAGGCTGTTTTTGCCAGACGGCTGCTCACAAGTGATTTTGGTTCCATCACAAATGTTGTCTTTATGGGCATGGGGGAACCACTTCATAACATTGATAATGTCATTAAAGCTGCAGATATTATGGTGGATGAACAAGGGCTTCATTTCAGCCCCCGCAAGGTCACTGTTTCAACCAGTGGGCTTGTTCCACAGCTCAGACGTTTCCTTCATGAATCCAACTGTGCATTAGCTGTTAGTTTAAATGCAACTACTGATGAGGTAAGAAACTGGATCATGCCGATAAATCGAAAGTATAAACTGGACGTGCTTCTTGAGACTCTTCGGGAGGAACTTTCCTTCAAACACAACTATAAAGTTCTATTTGAGTATGTGATGCTTGAAGGAATTAATGACAGCAATGAAGATGCAAAGAGGCTTATCGAGCTTGTGAAGGGCATTCCTTGCAAGATCAATCTCATCTCATTTAATCAGCATAGTGGATCCTTCTTCCAACCAACCAAAGAGGAAAGGATGATTGAATTCCGAAACACCCTGGCTGGGGCAGGATGCACTGTCTTTTTACGACTCAGTAGAGGCGATGATCAGATGGCTGCTTGTGGTCAATTAGGTAAACCTGGCACCATTCAAGCTCCATTGCTCCGTGTACCAGAGCAATTCCAAATGACAGTTGGAAGTTCAGCATGA 1416 0.4336 MRNWMSTAVGAVANYTVVLPIPLLSNRKTIPRTSPYLISILTPTRRFLSASSRPSSFTAHHNFSDYGEDGHCVTTSRKGSKVLLKGMTYPELQKWVQSHGYRPGQAMMLWKRMYGNNIWAHHIDELEGLNKDFKKMLSENAEFKALALKEIHTASDGTRKILFTLDDGLIIETVVIPCDRGRTTVCVSSQVGCAMNCQFCYTGRQAFFLPVMINLVVTPCFIFAASLLYIMGLKRHLTAAEIVEQAVFARRLLTSDFGSITNVVFMGMGEPLHNIDNVIKAADIMVDEQGLHFSPRKVTVSTSGLVPQLRRFLHESNCALAVSLNATTDEVRNWIMPINRKYKLDVLLETLREELSFKHNYKVLFEYVMLEGINDSNEDAKRLIELVKGIPCKINLISFNQHSGSFFQPTKEERMIEFRNTLAGAGCTVFLRLSRGDDQMAACGQLGKPGTIQAPLLRVPEQFQMTVGSSA. 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g03685 471 SFLD Radical SAM 188 383 IPR007197 GO:0003824|GO:0051536
Seca12g03685 471 Pfam Radical SAM superfamily 188 380 IPR007197 GO:0003824|GO:0051536
Seca12g03685 471 CDD Radical_SAM 192 420 - -
Seca12g03685 471 SUPERFAMILY Radical SAM enzymes 181 423 - -
Seca12g03685 471 ProSiteProfiles Radical SAM core domain profile. 179 438 IPR007197 GO:0003824|GO:0051536
Seca12g03685 471 Gene3D Aldolase class I 224 452 IPR013785 -
Seca12g03685 471 Gene3D Aldolase class I 146 215 IPR013785 -
Seca12g03685 471 FunFam Radical SAM superfamily protein 81 144 - -
Seca12g03685 471 PANTHER 23S RRNA METHYLTRANSFERASE 63 453 IPR040072 -
Seca12g03685 471 Gene3D - 81 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g03685 Seca-Chr12 94206671 94211498 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g03685 K06941 K22544 gmx:100813692 728.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g03685 12 94206671 94211498 Seca12g03685 12 94206671 94211498 ECH